LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g1057	ATGAAGGTGGCATGTTGCGCCCCAGACATAAAAGTTTCTAACTTGGGAACTCCAAGAACAAGGTTTGGTTCTGAGGAAGCCCTTGTGTTGCTTCAAAAATGTAGCAATTTCAAACAGCTCAAGCAAGTCCATGGCAAAATAATCCGTTTTGGTCTCACCCATGACCAATTGCTTATGAGGAAGCTGATTCAGCTCTCTTCCTCTTATGGCAAAATGAAATATGCCACTCTGGTATTTGATCAACTCAATGCCCCAGATACCTTCACTTGGAATGTCATGATTAGAGCTTACACCATTGGTGGTTCTCCTAAAATGGCCCTTCTTTTGTTCAAGGCCATGCTATGCCAGGGCTTTGTTGCACCTGACAAGTTTACATACCCTTTTGTGATCAATGCTTGCATGGCCTCTAATGAAGAAGCCCTTGATCTTGGAAGAGTGGTCCATGCTTTGGCCATCAAAATGGGGTTCTGGGGTGACATTTATGTGCAGAACACCATCATGAATCTCTACTTCAAGTGTGTGAATGTGGATGATGGACGGAAGGTGTTTGATAAAATGCGTGTGCGGAATGTGTTCGCGTGGACCACCGTGATTGCTGGGTTTGTTGCTTGTGGGGAGTTGGACACTGCCAGGAGACTGTTTGAGCAGATGCCTTCCAAGAATGTTGTTTCATGGACTGCAATGATTGATGGGCATGTGAAACACAAGCAGCCCGTTGAAGCCTTCGATCTGTTTGAAAGAATGCAGGTTGATAATGTGAGGCCAAATGAGTACACTCTGGTGAGCTTGGTCAGAGCATGTACTGAGGTGGGTAGCCTCAAGTTGGGTAGAAGGGTTCATGATTTTGCTCTCAAGAATGGTTTTGAGCTCGAGCCGTTCTTGGGTACCGCGCTTATAGACATGTACAGCAAGTGTGGCAGTTTAGATGATGCATGGAAAGTGTTTGATATGATGAAGGTGAGGACCTTGGCCACTTGGAACACCATGATCACTAGCTTGGGTGTGCACGGGTTTAGAAACGAAGCCTTGTCCCTTTTCGAAGAAATGGAGAAGGCAAACGAGGTTCCAGATGCTATCACTTTTGTTGGTGTTCTGAGTGCATGTGTTTATATGAATGACCTGGAACTAGCTCAGAAGTATTTCAATCTTATGACAGACCATTATGGTATAACACCTCTCTTGGAGCACTATACATGCATGGTTGAAAGCTATACTCGTGCAATTGAGTTGGATGAGATTTACACTTCTGGGAATACAATGGAAGCTAATCATGATGTTGCAGAGTTGCTCCACAAGAACAAACTCACTAGTATTGATGACATAAAAAAACTTATACACAAGCAATACAAGGATTTGGATTTCTCAGAACTAGTTTTAGACCATTCCTCCACGAGTTCTCAACCTCAACTCCAGAGCTCAAGTGGGATGCAGGTTGATATTTGA	1443	0.4394	MKVACCAPDIKVSNLGTPRTRFGSEEALVLLQKCSNFKQLKQVHGKIIRFGLTHDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDTFTWNVMIRAYTIGGSPKMALLLFKAMLCQGFVAPDKFTYPFVINACMASNEEALDLGRVVHALAIKMGFWGDIYVQNTIMNLYFKCVNVDDGRKVFDKMRVRNVFAWTTVIAGFVACGELDTARRLFEQMPSKNVVSWTAMIDGHVKHKQPVEAFDLFERMQVDNVRPNEYTLVSLVRACTEVGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGSLDDAWKVFDMMKVRTLATWNTMITSLGVHGFRNEALSLFEEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPLLEHYTCMVESYTRAIELDEIYTSGNTMEANHDVAELLHKNKLTSIDDIKKLIHKQYKDLDFSELVLDHSSTSSQPQLQSSSGMQVDI	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g1057	480	PANTHER	BNAA06G32750D PROTEIN	20	443	-	-
	Aed9g1057	480	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	20	443	-	-
	Aed9g1057	480	Pfam	PPR repeat family	324	368	IPR002885	-
	Aed9g1057	480	Pfam	PPR repeat family	85	133	IPR002885	-
	Aed9g1057	480	Pfam	PPR repeat family	220	267	IPR002885	-
	Aed9g1057	480	Gene3D	Tetratricopeptide repeat domain	19	139	IPR011990	GO:0005515
	Aed9g1057	480	Gene3D	Tetratricopeptide repeat domain	140	275	IPR011990	GO:0005515
	Aed9g1057	480	TIGRFAM	PPR: pentatricopeptide repeat domain	193	223	IPR002885	-
	Aed9g1057	480	TIGRFAM	PPR: pentatricopeptide repeat domain	88	122	IPR002885	-
	Aed9g1057	480	TIGRFAM	PPR: pentatricopeptide repeat domain	296	320	IPR002885	-
	Aed9g1057	480	TIGRFAM	PPR: pentatricopeptide repeat domain	223	257	IPR002885	-
	Aed9g1057	480	TIGRFAM	PPR: pentatricopeptide repeat domain	325	358	IPR002885	-
	Aed9g1057	480	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	322	356	IPR002885	-
	Aed9g1057	480	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	221	255	IPR002885	-
	Aed9g1057	480	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	190	220	IPR002885	-
	Aed9g1057	480	Pfam	PPR repeat	296	321	IPR002885	-
	Aed9g1057	480	Pfam	PPR repeat	164	191	IPR002885	-
	Aed9g1057	480	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	86	120	IPR002885	-
	Aed9g1057	480	Gene3D	Tetratricopeptide repeat domain	297	447	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g1057	Aed-Chr9	7724602	7726044	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g1057	30	456	Glycoside Hydrolase	AT3G49170	28.046	1.38e-50	182

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g1057	-		-	gmx:100789790	864.759