Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1046 ATGTTAAACACAGTTGATAGTTTTATTAAGCAGAAAAGGGGTAACACTAACACGAGTAACGTTCCAAATCCGACTTCCGACTGCTGCGACCCCTTCGACTTCGACCTGCAACACCGGCAGCGACCCGAGACACCGGCGGTGACTTCTGGCTCCGACACTGAGGCGTTTGGCTCCGAGGCTGAGGGCGTTTGGCTCTTCTGGTGTTCGGAAACCTTTTTGGCACCACCAAAGTTTGGTTTCTCAGTCAAGCCTTTTTATGCTTCATCTTCAACCAGAAGCCTTGGGGCTTCAACTGATGCCCCTGCACATGATAAGGCCTTGAGTGATGATAATGAGGAGGAGGAGGAGGAGGAGGATTACGACAAGAATGTTGGTTCTAGACCATCTGAAATTAAGCAGAAGCTTGAGCATTGCAGTGTTGTGCTATCACCAGAGCTGGTTGTGGAGATCCTTTCGAGAACTCGCAATGATTGGGAAGCGGCTTTCACTTTTTTCTTGTGGGCTGGTAAGCAGCCAGGGTATGCTCATTCGGTTCGCGAGTACCATTCGATGATCTCTATCCTTGGCAAGATGAGGAAGTTTGATACTGCTTGGACCTTAATTGAGGAAATGAGAGGAGGCGAAACTGGTCCATCTCTTGTTACTCCGCAGACACTGTTGATCATGATCAGGAAATACTGTGCTGTACATGATGTTGCAAGGGCTATCAATACTTTCTATGTTTTTAAACGATTTAACTTTCAAGTTGGGCTAGAGGAATTTCATAGCCTTCTCTCTGCCCTTTGTCGGTATAAGAACGTGCAAGATGCCGAGTACTTGCTGTTCTGCAACAAAAGTGTATTCCCATTTGATACCAAAAGCTTTAACATCATTCTGAATGGATGGTGCAATTTGATTGTTAGCACTAGTCAGGCAGAAAGAATATGGCAGGAGATGAGCAAGAGAAGAATCCAACAAGATGTTGTCTCCTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTAGACTTTACAAGGTGCTCAGGATGTTTGATGAGATGAAGAAAAGGAAGATCACTCCAGATAGGAAGGTTTATAATGCGGTAATTTATGCCCTAGCAAAGGGAAGGCTTGTGAAAGAAGCTTTCAATCTCATTGGAACAATGGAAGACAACGACATTACTCCGGATGTTGTAACTTACAACTCCTTAATCAAGCCTCTCTGCAAAGCAGGGAAAGTTGATGAGGCTAAACAACTTTTTGATGAGATGCTGAAACGGAACCTGTCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTGTATTACGGACCAAGGAAGACGTATTTGAGCTCTTGGACAAAATGAAAGATCTGGGATGCCACCCAACCATTGAGACTTATATAATGTTGATAAGAAAGTTTTGTCGCTGGCGTCAGCTTGATGATGTATTTAAGATATGGGATGCAATGATGGAAGATGAAATAGGCCATGATCGTAGTTCATATATAGTGCTGATTCATGGGCTGTTTCTGAATGGAAAGCTAGAGGAAGCACACAGATATTATGCAGAGATGCAGGAGAAAGGCTTCCTACTTGAACCGAAGACAGAAGAAATGCTTCAAGCATGGGTTGCCGGGAAACAGGCAACAGAGGGCCAAGGGACAGATGGAGGGAACTCCGCTGCTGTTGGATGGGTTTGGCTTGCAGAGACCACAGTCTACAGCAACATGACCCAACCAGAAGCATCACCATCGTGA 1740 0.446 MLNTVDSFIKQKRGNTNTSNVPNPTSDCCDPFDFDLQHRQRPETPAVTSGSDTEAFGSEAEGVWLFWCSETFLAPPKFGFSVKPFYASSSTRSLGASTDAPAHDKALSDDNEEEEEEEDYDKNVGSRPSEIKQKLEHCSVVLSPELVVEILSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWTLIEEMRGGETGPSLVTPQTLLIMIRKYCAVHDVARAINTFYVFKRFNFQVGLEEFHSLLSALCRYKNVQDAEYLLFCNKSVFPFDTKSFNIILNGWCNLIVSTSQAERIWQEMSKRRIQQDVVSYGSIISCYSKSSRLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAFNLIGTMEDNDITPDVVTYNSLIKPLCKAGKVDEAKQLFDEMLKRNLSPTIQTFHAFFRVLRTKEDVFELLDKMKDLGCHPTIETYIMLIRKFCRWRQLDDVFKIWDAMMEDEIGHDRSSYIVLIHGLFLNGKLEEAHRYYAEMQEKGFLLEPKTEEMLQAWVAGKQATEGQGTDGGNSAAVGWVWLAETTVYSNMTQPEASPS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1046 579 Pfam Pentatricopeptide repeat domain 437 466 IPR002885 -
Aed9g1046 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 120 551 - -
Aed9g1046 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Aed9g1046 579 Pfam PPR repeat 386 417 IPR002885 -
Aed9g1046 579 TIGRFAM PPR: pentatricopeptide repeat domain 495 524 IPR002885 -
Aed9g1046 579 TIGRFAM PPR: pentatricopeptide repeat domain 460 489 IPR002885 -
Aed9g1046 579 TIGRFAM PPR: pentatricopeptide repeat domain 181 205 IPR002885 -
Aed9g1046 579 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Aed9g1046 579 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Aed9g1046 579 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Aed9g1046 579 Gene3D Tetratricopeptide repeat domain 105 275 IPR011990 GO:0005515
Aed9g1046 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Aed9g1046 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Aed9g1046 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Aed9g1046 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Aed9g1046 579 Pfam PPR repeat family 320 368 IPR002885 -
Aed9g1046 579 Gene3D Tetratricopeptide repeat domain 441 575 IPR011990 GO:0005515
Aed9g1046 579 Gene3D Tetratricopeptide repeat domain 278 440 IPR011990 GO:0005515
Aed9g1046 579 Pfam PPR repeat 495 524 IPR002885 -
Aed9g1046 579 Pfam PPR repeat 181 205 IPR002885 -
Aed9g1046 579 PANTHER OS01G0816000 PROTEIN 120 551 - -
Aed9g1046 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Aed9g1046 579 MobiDBLite consensus disorder prediction 91 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1046 Aed-Chr9 7591562 7598697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1046 170 534 Glycosyltransferase AT1G05670 27.493 1.75e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1046 - - gmx:100785546 848.58