Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1011 ATGAGAGAGATAATTAGTATTCATATTGGACAAGCTGGGATTCAGGTGGGGAATTCATGTTGGGAGTTGTATTGCCTTGAGCATGGAATTAACCCTGATGGCACCATGCCTAGTGATACCACAGTTGGCATTGCACATGATGCTTTCAACACCTTCTTCAGCGAGACCGGATCCGGAAAGCATGTGCCAAGGGCTTTATTTGTTGATCTGGAACCTAGTGTTATTGATGAAGTAAGATCTGGTTCTTACAGACAACTCTTTCACCCTGAGCAATTAATTTCTGGCAAGGAGGATGCTGCCAATAACTTTGCAAGGGGACACTACACTGTTGGAAGAGAAATTGTTGAACTATGCCTTGATCGTATCAGAAAATTAGCAGACAATTGCACTGGTTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGATCACTACTTTTGGAAAGGTTGTCTGTGGATTATGGCAAGAAGTCTAAACTTGGCTTTACCATCTACCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAACAGTGTCCTTTCCACTCATTCTCTTCTTGAGCACACTGATGTGGTTGTGCTTTTGGACAATGAAGCAATATATGATATCTGCAGAAGATCATTAGACATAGAAAGGCCAACTTACACAAACTTGAACCGTCTGATATCTCAAATTATCTCTTCCTTGACCACTTCCCTGAGATTTGATGGTGCCATTAACGTGGACATTACCGAGTTCCAGACTAATCTCGTGCCATATCCTCGTATTCACTTCATGCTTTCATCTTATGCCCCTGTAATATCTGCTGCAAAGGCCTACCATGAGCAGCTATCGGTTCCCGAGATCACCAGCGCTGTTTTTGAGCCTTCAAGTATGATGGCTAAGTGTGATCCTAGACATGGCAAGTGCCCTACTGGTTTCAAGTGTGGTATCAACTACCAGCCTCCAACAGTGGTGCCAGGAGGTGATCTTGCCAAGGTGCAGCGCGCGGTTTGCATGATAAGCAACAACACTGCTGTTGCTGAGGTTTTCTCACGCATTGATTACAAGTTTGACCTCATGTATGCTAAGAGGGCATTTGTACACTGGTATGTGGGTGAAGGAATGGAAGAAGGTGAATTCTCTGAAGCCAGGGAGGATCTTGCTGCTCTCGAAAAGGACTACGAAGAGGTTGGAGCAGAAGGCGAAGAAGAAGAAGAACCCGAAGATTAG 1239 0.4463 MREIISIHIGQAGIQVGNSCWELYCLEHGINPDGTMPSDTTVGIAHDAFNTFFSETGSGKHVPRALFVDLEPSVIDEVRSGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITSAVFEPSSMMAKCDPRHGKCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGEEEEEPED 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1011 412 Coils Coil 383 403 - -
Aed9g1011 412 PANTHER TUBULIN 1 311 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PANTHER TUBULIN 312 407 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 Pfam Tubulin C-terminal domain 263 312 IPR018316 -
Aed9g1011 412 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Aed9g1011 412 CDD alpha_tubulin 2 397 - -
Aed9g1011 412 SMART Tubulin_C_4 248 358 IPR018316 -
Aed9g1011 412 Gene3D Tubulin/FtsZ, GTPase domain 1 265 IPR036525 -
Aed9g1011 412 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Aed9g1011 412 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 325 344 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 350 366 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 312 325 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 387 403 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g1011 412 PANTHER TUBULIN ALPHA-1 CHAIN 312 407 - -
Aed9g1011 412 PANTHER TUBULIN ALPHA-1 CHAIN 1 311 - -
Aed9g1011 412 PRINTS Tubulin signature 345 373 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Aed9g1011 412 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Aed9g1011 412 SUPERFAMILY Tubulin C-terminal domain-like 246 400 IPR008280 -
Aed9g1011 412 Gene3D - 266 311 IPR037103 -
Aed9g1011 412 Gene3D Helix hairpin bin 349 401 IPR023123 -
Aed9g1011 412 Gene3D - 312 348 IPR037103 -
Aed9g1011 412 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1011 Aed-Chr9 7286217 7289606 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1011 K07374 - gmx:100796371 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1011 9 7286217 7289606 Aed7g0845 7 6413798 6418079 PCT