LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g1002	ATGGCTAAAATCTCCATCTTGTCGGTGGGGCTATGGCTACTAGTTAACTGTTTAGGGTTGTTGGATGCAGAAGCAGAATACATGAAATACAAAGACCCTAAACAGTCAATTGATTCCCGAGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGATTGAACGCAAGTATGCTTCTGCTGATTCGGTTAAGAAGTATTTTATTGCTCCACAGGCTTCTGCTGAAGCCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCATCCCGCCTTGGAATTCCACTGTTTTATGGGATTGATGCTGTTCATGGCCACAGCACTATTTACAAAGCAACTATATTTCCTCACAATATTGGTCTTGGAGCCACCAGGGAGCCTGAGCTGGTTAAGAGGATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATAATTATGCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATCCGAAACTAGTTCAAGCTATGACTGAAATCATACCAGGATTGCAAGGTGACATCCCTGCTAATTTACCAAAGGGTGTCCCTTTTATCAGTGGAAAAGAAAAAGTCCTTGCTTGTGCTAAGCACTATGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGAACAACACTGTTATAGATAGAGATGGATTGATGAGAATTCACATGCCAGGCTACTTCAACTCAATCAGCAAGGGTGTGGCATCCATTATGGTCTCTTACTCGTGTTGGAATGGAGTGAAAATGCATGCTCACCATGACCTTATTACTGGCTACCTCAAGAATACTCTCCAATTCAAGGGCTTTGTTATTTCAGATTTTGAAGGTATTGATAGGATTACCTCTCCACCTCATGCAAACTTCACTTATTCAATTGAAGCAGGAGTTTCTGCCGGCATTGACATGTTCATGAATCCAAAGCTTTACATAGAATTCATAGATGATCTAACCATGTTGGTGAAAAATAAGTTCATCCCTATGAGTAGGATTGATGATGCGGTGAGAAGAATTTTGGGGGTTAAGTTCATGATGGGTATTTTTGAGACCCCTTTTGCTGATTACAGTTTGGTCAGATATTTGGGAATCCAGAAGCATAGACAATTGGCAAGGGAAGCTGTAAGGAAATCAATGGTCCTTCTAAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCTCTTCCTAAAAGGAACACTGTTGATCCTGAAACTGAAGTGGTCTACAAGGAGAACCCTGATGCAGAATTTGTCAAATCCAACGGATTTTCCTATGCCATAGTTGTAGTAGGAGAGCATCCATATGCTGAAATGCATGGTGACAACATGAACTTGACAATCCCGGACCCTGGTCTTGAGACCATAACAAATGTGTGTGGAGCAACAAAATGTGTGGTGGTCATAATTTCTGGTCGTCCAATGGTGATTGAACCATATGTTGATTCAATAGATGCAATTGTTGCTGCATGGCTCCCAGGTAGTGAAGGCCAAGGTGTGGCTGATGTTTTATTTGGTGACTATGGTTTCACAGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTTCCAATGAATGTTGGAGATCCTCACTATGATCCTCTCTTCCCATTTGGCTTTGGCCTTTCTACAGAACCTACTAAGGCCCTTTATTCATCGTAG	1737	0.4197	MAKISILSVGLWLLVNCLGLLDAEAEYMKYKDPKQSIDSRVEDLVSRMTLEEKIGQMLQIERKYASADSVKKYFIAPQASAEAWIDMVNEFQKGALSSRLGIPLFYGIDAVHGHSTIYKATIFPHNIGLGATREPELVKRIGAATALEVRATGIQYNYAPCIAVCRDPRWGRCYESYSEDPKLVQAMTEIIPGLQGDIPANLPKGVPFISGKEKVLACAKHYVGDGGTINGIDENNTVIDRDGLMRIHMPGYFNSISKGVASIMVSYSCWNGVKMHAHHDLITGYLKNTLQFKGFVISDFEGIDRITSPPHANFTYSIEAGVSAGIDMFMNPKLYIEFIDDLTMLVKNKFIPMSRIDDAVRRILGVKFMMGIFETPFADYSLVRYLGIQKHRQLAREAVRKSMVLLKNGESADKPLLPLPKRNTVDPETEVVYKENPDAEFVKSNGFSYAIVVVGEHPYAEMHGDNMNLTIPDPGLETITNVCGATKCVVVIISGRPMVIEPYVDSIDAIVAAWLPGSEGQGVADVLFGDYGFTGKLPRTWFKTVDQLPMNVGDPHYDPLFPFGFGLSTEPTKALYSS	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g1002	578	SUPERFAMILY	(Trans)glycosidases	27	402	IPR017853	-
	Aed9g1002	578	Gene3D	-	23	387	IPR036962	GO:0004553\|GO:0005975
	Aed9g1002	578	Pfam	Glycosyl hydrolase family 3 N terminal domain	49	365	IPR001764	GO:0004553\|GO:0005975
	Aed9g1002	578	PRINTS	Glycosyl hydrolase family 3 signature	285	303	IPR001764	GO:0004553\|GO:0005975
	Aed9g1002	578	PRINTS	Glycosyl hydrolase family 3 signature	169	185	IPR001764	GO:0004553\|GO:0005975
	Aed9g1002	578	PRINTS	Glycosyl hydrolase family 3 signature	123	142	IPR001764	GO:0004553\|GO:0005975
	Aed9g1002	578	PRINTS	Glycosyl hydrolase family 3 signature	99	115	IPR001764	GO:0004553\|GO:0005975
	Aed9g1002	578	PRINTS	Glycosyl hydrolase family 3 signature	215	231	IPR001764	GO:0004553\|GO:0005975
	Aed9g1002	578	Pfam	Glycosyl hydrolase family 3 C-terminal domain	448	568	IPR002772	GO:0004553\|GO:0005975
	Aed9g1002	578	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	403	568	IPR036881	GO:0004553\|GO:0005975
	Aed9g1002	578	PANTHER	BETA-D-GLUCOSIDE GLUCOHYDROLASE	422	578	-	-
	Aed9g1002	578	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	422	578	-	-
	Aed9g1002	578	PANTHER	BETA-D-GLUCOSIDE GLUCOHYDROLASE	7	422	-	-
	Aed9g1002	578	Gene3D	-	424	570	IPR036881	GO:0004553\|GO:0005975
	Aed9g1002	578	Gene3D	-	388	423	IPR036881	GO:0004553\|GO:0005975
	Aed9g1002	578	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	7	422	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g1002	Aed-Chr9	7201234	7205318	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g1002	2	573	Glycoside Hydrolase	AT5G20950	62.679	0.0	780

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g1002	K05349		-	gmx:100779642	1048.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed9g1002	9	7201234	7205318	Aed9g1002	9	7201234	7205318	ECH