Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0323 ATGGCATCAGCCAAATGGTTGTTGAAGATAATTATAGCCTTTCCATGCTTAGCTCCTCCCAGGCCCAAATCAGCATCAAAAGATGATGGCAGGCTCAAAGACGTTTTTGATCACTTGGACATTGAGAAAGATGGCAAGATTTCGGGCACTGAACTAATGGATTATTTTGCGTCCGTGGGGGAGTCAGTGAGCCATAAAGTGGCAGAGAGAGTGATCAACGAGTTTGACTCAGACGGTGACAAGTTGCTTGATTTCGGAGACTTTGAGAAACTGATGAAGCAAGAGGAGGACAGTGAGGAATTGGAGAGTGTTCTAAGAAGCGCGTTCGAGATGTTCGAGGTTGACAAAGGCTGTGGCTTCATAACGCCCAAAGGGTTGCAACAAATGTTGCGCCAACTGGGAGATGTCAAGTCCCACGATCAGTGTGCGGCCATGATTCGCCCCTTCGATCTTGACGGTAATGGCTTTCTTGATTTTCACGAATTTCAGCAGATGATGTCGCCAGCTTCTTGA 513 0.4698 MASAKWLLKIIIAFPCLAPPRPKSASKDDGRLKDVFDHLDIEKDGKISGTELMDYFASVGESVSHKVAERVINEFDSDGDKLLDFGDFEKLMKQEEDSEELESVLRSAFEMFEVDKGCGFITPKGLQQMLRQLGDVKSHDQCAAMIRPFDLDGNGFLDFHEFQQMMSPAS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0323 170 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Aed9g0323 170 Gene3D - 97 169 - -
Aed9g0323 170 ProSiteProfiles EF-hand calcium-binding domain profile. 137 170 IPR002048 GO:0005509
Aed9g0323 170 PANTHER CALCIUM BINDING PROTEIN 14 167 - -
Aed9g0323 170 Pfam EF-hand domain pair 31 93 IPR002048 GO:0005509
Aed9g0323 170 Pfam EF-hand domain pair 103 167 IPR002048 GO:0005509
Aed9g0323 170 ProSitePatterns EF-hand calcium-binding domain. 150 162 IPR018247 -
Aed9g0323 170 Gene3D - 27 96 - -
Aed9g0323 170 PANTHER CALMODULIN 14 167 - -
Aed9g0323 170 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Aed9g0323 170 SUPERFAMILY EF-hand 18 166 IPR011992 -
Aed9g0323 170 CDD EFh 105 167 IPR002048 GO:0005509
Aed9g0323 170 ProSiteProfiles EF-hand calcium-binding domain profile. 27 62 IPR002048 GO:0005509
Aed9g0323 170 SMART efh_1 67 95 IPR002048 GO:0005509
Aed9g0323 170 SMART efh_1 31 59 IPR002048 GO:0005509
Aed9g0323 170 SMART efh_1 104 133 IPR002048 GO:0005509
Aed9g0323 170 SMART efh_1 141 169 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0323 Aed-Chr9 2247366 2247878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0323 16 167 EF-hand Containing Proteins AT3G50770 49.398 2.08e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0323 K13448 - gmx:100775336 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0323 9 2247366 2247878 Aed9g0323 9 2247366 2247878 ECH