Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0273 ATGATATTGCAGTTCTTCGTGCTTTCACAGAGAGGCGACAACATCGTATACCGCGATTATCGTGGTGAAGCTCAAAAAGGAAGCGCTGAGACATTTTTCCGAAAAGTCAAGTTCTGGAAAGAGGATGCTGAGGGAGATGCTCCACCTGTTTTTGTAGATGGTGTGAACTACTTCCACGTGAAGGTTGCTGGATTGCTGTTTGTTGCTACTACTAGAGTCAATGTCTCCCCTTCTCTCGTTTTGGAACTTTTACAAAGAATTGCACGTGTCATCAAAGATTACCTTGGTGTTCTCAATGAAGATTCCTTTCGAAAGAACTTCGTGCTCGTTTATGAATTGCTGGATGAAGTCATTGATTTTGGTTACGCGCAAACAACATCCACTGAGGTTTTGAAGTCATATGTTTTCAATGAGCCTATAGTGATTGATGCTGCGCGGATGCCTCCACTTGGCCCTGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACAGCTATTACAAAGTCCGTGGTTGCTAATGAACCTGGTGGTAGGAAGAGGGATGAGATATTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGGATTTATACTTACTAGTGAGATAGATGGAACCATTCAAATGAAGAGTTATCTTACCGGTAACCCAGAGATTCGACTTGCTCTCAATGAGGACCTGACTATAGGAACAAGTGTCATGAATTATCGTATGACTCAACCATTTAAGCCACCCTTTCGCATTAATGCATTGATTGAAGAAACAGGATCCCTGAAGGCTGAAGTGACCATTAAAGTGCGGGCTGAATTCAATTCAAGTATCAATGCTAACACTGTTCTTGTACAGATGCCTCTGCCATCATTTACATCTCGAGTTAATTTTGAGTTAGAACCTGGAGCAGTTGGACACACCACTGATTTTAAGGAAGCAAATAAAAGACTGGAATGGGGCCTGAAAAAGGTTGTTGGTGGATCTGAACATACTTTACGAGCTAAGCTGACATTTTCACAGGAGTTACATGGAAATATCATGAAAGAAGCAGGGCCTGTTAGCATGACTTTCACCATACCTATGCACAATGCTTCAAGGCTTCAGGTTAAGTACTTGCAAATAGCGAAGAAATCAAAAGCACATAATCCTTATCGATGGGTTAGATATGTAACCCAAGCAAACTCATACGTTGCCCGGTTGTAA 1209 0.4144 MILQFFVLSQRGDNIVYRDYRGEAQKGSAETFFRKVKFWKEDAEGDAPPVFVDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYAQTTSTEVLKSYVFNEPIVIDAARMPPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLTIGTSVMNYRMTQPFKPPFRINALIEETGSLKAEVTIKVRAEFNSSINANTVLVQMPLPSFTSRVNFELEPGAVGHTTDFKEANKRLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPVSMTFTIPMHNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0273 402 Gene3D Mu homology domain, subdomain B 250 364 - -
Aed9g0273 402 PANTHER AP COMPLEX SUBUNIT MU 2 238 - -
Aed9g0273 402 Gene3D Mu homology domain, subdomain B 183 238 - -
Aed9g0273 402 SUPERFAMILY SNARE-like 1 140 IPR011012 -
Aed9g0273 402 CDD AP-4_Mu4_Cterm 177 402 - -
Aed9g0273 402 Gene3D - 1 140 - -
Aed9g0273 402 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 181 401 IPR036168 -
Aed9g0273 402 PANTHER AP COMPLEX SUBUNIT MU 237 402 - -
Aed9g0273 402 PIRSF AP_complex_mu 235 402 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed9g0273 402 PIRSF AP_complex_mu 1 237 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed9g0273 402 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed9g0273 402 PRINTS Clathrin coat assembly protein signature 320 331 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed9g0273 402 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed9g0273 402 CDD AP4_Mu_N 4 142 - -
Aed9g0273 402 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 238 - -
Aed9g0273 402 Pfam Adaptor complexes medium subunit family 237 401 IPR028565 -
Aed9g0273 402 Pfam Adaptor complexes medium subunit family 181 234 IPR028565 -
Aed9g0273 402 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 237 402 - -
Aed9g0273 402 ProSiteProfiles Mu homology domain (MHD) profile. 182 401 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0273 Aed-Chr9 1942682 1948933 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0273 K12402 - gmx:100800985 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0273 9 1942682 1948933 Aed9g0273 9 1942682 1948933 ECH