Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0242 ATGAGCAGAAGAGCACCACCTGATCCTGTGGCAGTGCTACGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTCTAAGCCGCTATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGGATTTGGGATACCCTTCAGCATCGGACAGTGTCATCTGGATGGTTACATAGTGCTGCACATGGTATTGTTGCTGTTGCCAGTAGTTCTTCCCTCGGAGACAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAATTTGATGATGCTGGTTTGTCCAGGATTCCAGCACTTACAATCAAGACAAACACTTACCACTTTTGCAAGTTTTCCATGGTGAAGAATCCTTCTGTTTGGTCAAAAGAAGGAAAAGCATCAGAAGATTCCTATAGAACAGAGCTAGGAGGAATGTCCGATAGAGAAATTCTGGAGGATGAAAGAGAAGAGGCTTTTACCAATCAAAGCTGTTCTGAAAGCTTTGGAGGGCAACAATATGTGGCTTTGTCAGGGGAAAACTCTTCTGAGGTTGAAATATGGGATCTCAGGTCAGCTGAAAAAGTTGTGCAGCTCCCTTCAGGCAATCCTAGTAACTCTTCAAGTGCTTGCAACAAAGTTCTAAGCATATGCAATGATGGGTCTTGCAAAGGGGGTATCTCAGGAGCTGCCGATGACAAAATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAAGAAAGAAATCAGTTTGGAGCGACCAGGAATCTCAGGCACCTCAATTCGGCCTGATGGAAAAATTGTTGCAACTGCTGGCTGGGACCACAGGTTGAGGATATATAATTACCGCAAAGGGAATACTTTAGCTATTTTAAAGTATCACCATGGCACATGCAATGCTGTAACTTATTCGTCTGATTGTAAACTTATGGCCTCTGCATCCGAAGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 990 0.4455 MSRRAPPDPVAVLRGHRASVTDISFHPSKPLLFSGSADGEVRIWDTLQHRTVSSGWLHSAAHGIVAVASSSSLGDNKFVSQGRDGTVKVWEFDDAGLSRIPALTIKTNTYHFCKFSMVKNPSVWSKEGKASEDSYRTELGGMSDREILEDEREEAFTNQSCSESFGGQQYVALSGENSSEVEIWDLRSAEKVVQLPSGNPSNSSSACNKVLSICNDGSCKGGISGAADDKIVMYSLDHSSGTCVVKKEISLERPGISGTSIRPDGKIVATAGWDHRLRIYNYRKGNTLAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0242 329 Gene3D - 123 328 IPR015943 GO:0005515
Aed9g0242 329 PANTHER - 208 328 - -
Aed9g0242 329 Pfam WD domain, G-beta repeat 286 322 IPR001680 GO:0005515
Aed9g0242 329 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Aed9g0242 329 Pfam WD domain, G-beta repeat 260 281 IPR001680 GO:0005515
Aed9g0242 329 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Aed9g0242 329 PANTHER - 3 202 - -
Aed9g0242 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Aed9g0242 329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 329 - -
Aed9g0242 329 SMART WD40_4 6 45 IPR001680 GO:0005515
Aed9g0242 329 SMART WD40_4 242 281 IPR001680 GO:0005515
Aed9g0242 329 SMART WD40_4 48 91 IPR001680 GO:0005515
Aed9g0242 329 SMART WD40_4 284 323 IPR001680 GO:0005515
Aed9g0242 329 SUPERFAMILY WD40 repeat-like 8 324 IPR036322 GO:0005515
Aed9g0242 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 329 IPR001680 GO:0005515
Aed9g0242 329 PANTHER TRANSDUCIN BETA-LIKE 3 3 202 - -
Aed9g0242 329 PANTHER TRANSDUCIN BETA-LIKE 3 208 328 - -
Aed9g0242 329 Gene3D - 2 111 IPR015943 GO:0005515
Aed9g0242 329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Aed9g0242 329 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Aed9g0242 329 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Aed9g0242 329 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0242 Aed-Chr9 1740134 1745773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0242 162 324 Miscellaneous Gene Families AT5G08390 23.313 8.77e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0242 K24770 - gmx:100800482 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0242 9 1740134 1745773 Aed9g0242 9 1740134 1745773 ECH