Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0237 ATGTCTGCGTCCGAAGCGGAGAAGAAGGTCGAGGAGGAAGAGAACAATGAAGAGGTCAAAGCGGGAGAACTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGTCGTCGCAAAGGCGCCGTCGACGGCAACCTAGTCTCTCCCTCGCGCCTCCGTCCTCTCGTCGGCGTAGATATTCGCTACGTCGCCGCCGGTTGCGTGTCTTGTCATTGCGTGGCTTTGGACGTTGAAGGGCGTTGTTATACATGGGGACGTAATGAGAAAGGGCAACTGGGTCATGGAGATATGATTCAGCGTGATAGACCAACTGTTGTGTCTGAACTTTCCAAATACAAAATTGTCAAAGCTGCATCAGGGAGGAGCCATACAGTGGTTGTTACAGAGGATGGAAATTCCCTGGCCTTCGGATGGAACAAACATGGACAGCTAGGTTCTGGTTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGCGGTGACTTCACTGTGTGGTTATCTTTTGTTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCACGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAAGCCCAGCCACGACCTCGAGCAATTGCTTCTCTTGCTGGGGAAACAATTATCAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTTCGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGCTTGGACATAGGGAGCAGAAGGATGAGTGGGCCCCACGTCGTGTTGAAGTTTTTCAAAATAGAAATGTTTTGCCGCCTGATGCAATCATATCAGCTGGCTCTGTGAATTCTTCATGTACTGCTGGTGGAGGGCAGTTGTATATGTGGGGCAAATTAAAGAACACTGGTGATGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGTGGTTGGAATCTGCGATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGAATGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCATCAGCTGTACCCAAGAAGGTGGATTTACTTGAGGGTATGCATGTAATAAGTGTTGCTTGTGGTTTGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGAACAGGTAGCTCTTAATTCTTACCTATTATTATCTCAGGAGTTCAGGAGCTCATTAGCTCATGTTTATTGTAATGAGGTCGTAAACACAACTCCAGTGCCTAAGCAGGCTGGGAAAAAGGGTGCAAAAGGAGCTGCTGACAATTTGAAGAAGAGGAAAAAAGCGAAAGATTCATCTGACTCGGAGGAGGAAGAGGAGGATGCTGAAGAAAGTAGTGAGGAGGATAGTGAGGATCAAATGAATGGCAAGGCTGAGGTGAAAAGGGGACGTGGTAGAGGCCGAGGTAAGGCAAAGGCACTGGCACCGAAAAAGTCGAGTGCGAAGGGAAAAGGGTCTGGCCGGGGGACTGCTGCAGCAAATAAAAACAGTTCTAAATCCCCTCAGCCTCAGGTGAAATCTGGCAAGAGAGGAAGACCCCGTAAGTCATAA 1662 0.4765 MSASEAEKKVEEEENNEEVKAGELLFCGATCWDIIGRRKGAVDGNLVSPSRLRPLVGVDIRYVAAGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDRPTVVSELSKYKIVKAASGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSFVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIASLAGETIIKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWAPRRVEVFQNRNVLPPDAIISAGSVNSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDLLEGMHVISVACGLGHSMVIVDRANVADRLEQVALNSYLLLSQEFRSSLAHVYCNEVVNTTPVPKQAGKKGAKGAADNLKKRKKAKDSSDSEEEEEDAEESSEEDSEDQMNGKAEVKRGRGRGRGKAKALAPKKSSAKGKGSGRGTAAANKNSSKSPQPQVKSGKRGRPRKS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0237 553 PANTHER PROTEIN RCC2 4 536 IPR028641 -
Aed9g0237 553 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 250 305 IPR000408 -
Aed9g0237 553 MobiDBLite consensus disorder prediction 472 487 - -
Aed9g0237 553 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 404 IPR000408 -
Aed9g0237 553 MobiDBLite consensus disorder prediction 443 553 - -
Aed9g0237 553 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 79 130 IPR000408 -
Aed9g0237 553 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 117 127 IPR000408 -
Aed9g0237 553 MobiDBLite consensus disorder prediction 527 542 - -
Aed9g0237 553 Gene3D - 3 216 IPR009091 -
Aed9g0237 553 Gene3D - 217 408 IPR009091 -
Aed9g0237 553 SUPERFAMILY RCC1/BLIP-II 21 404 IPR009091 -
Aed9g0237 553 Coils Coil 3 23 - -
Aed9g0237 553 MobiDBLite consensus disorder prediction 455 471 - -
Aed9g0237 553 MobiDBLite consensus disorder prediction 500 514 - -
Aed9g0237 553 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Aed9g0237 553 PRINTS Chromosome condensation regulator RCC1 signature 236 252 IPR000408 -
Aed9g0237 553 PRINTS Chromosome condensation regulator RCC1 signature 252 266 IPR000408 -
Aed9g0237 553 PRINTS Chromosome condensation regulator RCC1 signature 133 149 IPR000408 -
Aed9g0237 553 PRINTS Chromosome condensation regulator RCC1 signature 80 96 IPR000408 -
Aed9g0237 553 PRINTS Chromosome condensation regulator RCC1 signature 114 127 IPR000408 -
Aed9g0237 553 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 131 181 IPR000408 -
Aed9g0237 553 Pfam Regulator of chromosome condensation (RCC1) repeat 130 176 IPR000408 -
Aed9g0237 553 Pfam Regulator of chromosome condensation (RCC1) repeat 355 401 IPR000408 -
Aed9g0237 553 Pfam Regulator of chromosome condensation (RCC1) repeat 187 246 IPR000408 -
Aed9g0237 553 Pfam Regulator of chromosome condensation (RCC1) repeat 249 285 IPR000408 -
Aed9g0237 553 Pfam Regulator of chromosome condensation (RCC1) repeat 78 127 IPR000408 -
Aed9g0237 553 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 236 246 IPR000408 -
Aed9g0237 553 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 249 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0237 Aed-Chr9 1707368 1713236 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0237 - - gmx:100819842 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0237 9 1707368 1713236 Aed9g0237 9 1707368 1713236 ECH