Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0193 ATGGCCTTCATCAAATCAAGCGCACGCTCCTTCCTACCCCGCAGTTTCAAACTACACTACTCTTCTTCAGCTTCAGCTTCAGCCTTAGTTCCCGAACCTGATATTCAACTCGACACAAACGACACTCCTCAAAACCCTAATCTTTCCCCAGAAGAAACCACCTTAGCTGACAAATTCCACGCCGCGATCAAAGATCATCACCGCAGAAACCCCACACCCAACCCTAACGCCTCTCCCCCCACTCCCAACCTCACCATCCCCGACCTGTCCCTCTCCTTCTCCGCAATCTCCGCCGCCCACCCATTCCCCCCCTCCGTGGCCCGCCGCGTCATCGAAAAATGCGGCGGCGTCCGCCACGGCATCCCCTTCCTCCAATCCCTCTCGTTCTTCAACTGGGCCACAGCGCTCGACGACTTCCCGGCCTCGCCGGAGCCCTACAACGAGATGCTCGACCTCGCCGGAAAGTTGAGACATTTCGACCTGGCGTGGCACGTCATCGATCTCATGAAGTCTCGCGGCGTCGAAATCACCGTCGACACGTTCTCCGCCCTCGTCCGCCGCTACGTGAGGGCTGGATTGGCCGCGGAGGCGGTGCACGCGTTTAACCGTATGGAGGACTACGGCTGCACCCCTGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAACGAGGCTCAATCGTTTTTCGATAGTCTTAAGCATAGGTTCGAGCCTGATGTTGTAGTTTACACTAGCTTAGTTCATGGGTGGTGCCGTGCTGGTAACATAGCTAAGGCTGAAGAGGTGTTTAGTGATATGAAGGTTGCTGGAATTAAACCTAATGTTTATACTTATAGCATTGTGATCGATTCTTTGTGCCGGTGCGGGCAAATTTCGCGTGCTCATGATGTTTTCTCGGAGATGATTGATGCAGGGTGTGATCCTAATGCGGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTCTTGCAGGTTTACAATCAGATGAAGAGGCTCGGTTGTCCTGCTGATACCATTAGCTATAATTTCATCATCGAATGTCATTGTAGGGATGAGAATCTTGATGAAGCTGCAAAGATTCTCAATTTGATGGACAAGAAAGGGGTTGCTCCTAATGCCTCCACTTTCAATTTTATTTTTGGATGCATAGCTAAGTTACATGATGTGAATGGTGCGCATCGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACACTGACTTATAATATATTGATGAGGATGTTTGCAGAGTCGAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAATCAGGTTGAACCTAATGTGAATACTTACCGGATTCTGATTTCGATGTTCTGTGAAATGAAGCACTGGAACAATGCGTACAAGCTAACCAAGGAGATGGTTGAAGAAAAATGTCTAAGACCAAATCTGTCTGTTTATGAATTGGTGCTGGAGCAGCTGAGAAATGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGAAAAGATGGTAGCAAGGGGATTTGTCACTCGTCCTTTGTAG 1590 0.4843 MAFIKSSARSFLPRSFKLHYSSSASASALVPEPDIQLDTNDTPQNPNLSPEETTLADKFHAAIKDHHRRNPTPNPNASPPTPNLTIPDLSLSFSAISAAHPFPPSVARRVIEKCGGVRHGIPFLQSLSFFNWATALDDFPASPEPYNEMLDLAGKLRHFDLAWHVIDLMKSRGVEITVDTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGNIAKAEEVFSDMKVAGIKPNVYTYSIVIDSLCRCGQISRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCPADTISYNFIIECHCRDENLDEAAKILNLMDKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLTKEMVEEKCLRPNLSVYELVLEQLRNAGQLKKHEELVEKMVARGFVTRPL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Aed9g0193 529 Gene3D Tetratricopeptide repeat domain 402 528 IPR011990 GO:0005515
Aed9g0193 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 528 - -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Aed9g0193 529 Gene3D Tetratricopeptide repeat domain 240 310 IPR011990 GO:0005515
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Aed9g0193 529 Pfam PPR repeat 146 174 IPR002885 -
Aed9g0193 529 Pfam PPR repeat 318 348 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 242 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 180 212 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 459 491 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Aed9g0193 529 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Aed9g0193 529 Pfam PPR repeat family 351 396 IPR002885 -
Aed9g0193 529 Pfam PPR repeat family 184 225 IPR002885 -
Aed9g0193 529 Pfam PPR repeat family 245 294 IPR002885 -
Aed9g0193 529 Pfam PPR repeat family 420 468 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Aed9g0193 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Aed9g0193 529 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 10 528 - -
Aed9g0193 529 Gene3D Tetratricopeptide repeat domain 311 401 IPR011990 GO:0005515
Aed9g0193 529 SUPERFAMILY TPR-like 212 446 IPR011990 GO:0005515
Aed9g0193 529 Gene3D Tetratricopeptide repeat domain 122 239 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0193 107 523 Glycosyltransferase AT1G05670 28.211 1.00e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0193 - - gmx:100800850 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0193 9 1372808 1374397 Aed9g0193 9 1372808 1374397 ECH