Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0186 ATGCCTACACTAGTTGCTGAGGATTCACCCAATATTTTGTGTGCCTCAGGAATCAAGGGCAAGCGAGTGACTACGTTGTCAGCAGAAGAGAATGGCCTCAGCCTCACTGATTTCATTCAAACAATCATTAATGCTGAGAGTAGTAGTAACATCGACTCGCCATTCAGCGTCCTTGATTTGGGCGTCGTAATGGGCCTCATGAACAAATGGGCCACCAAGCTCCCCACGGTCCAGCCCTTCTACGCCGTCAAGTGCAACCCCAACCTCTCTCTAATTGGCGCACTCGCCGCACTCGGCTCTAGCTTTGACTGCGCCAGCAAAGCCGAGATAGATTCCGTTCTCTCCCTCGGAGTCTCACCCGACAGAATCATCTACGCCAACCCATGCAAATCCGAGTCCCACATCAGATACGCCGCCACCGTTGGAGTCAACGTCACAACCTACGACTCCAGAGACGAGGTCGAAAAAATCCGCAAATGCCACCCCACGTGCGACTTGCTACTCCGCATTAAACCTCCACAAGAGAGTGGAGCGCAAATCAGCTTGGGCCTCAAATTCGGCGCGCTCCCCGAAGAGGTCCCTGAGCTTCTCAAAGCGGCTCACGAGGCGGGGCTCAAGGTAATCGGCGTGTCCTTCCACGTTGGCAGCGGTGGAGCCGACATGCGAGCCTATCAGGGAGCCATATCCGCCGCTAAGGGCGTCTTCGACACGGCTTCTCGGCTTGGCTTGCCGAGAATGCGCATCCTCGACGTTGGCGGCGGCTTCACCTCTGGGCCGCTGTTCGACGCCGCGGCTTTGAAAATCAACGCGGCGATTGAAGCCAGCTTCGGGAACGAGAAGGGGCTCGCGGTGATTGGCGAGCCGGGTCGTTACTTTGCGGAAACGGCTTTCACGTTGGCGAGCAGAGTTATCGGGAAGCGCGTGAGGGGGGAAGTGAGGGAATACTGGATTGACGATGGGATTTACGGAACGCTTAATAACATAGTGTTTGACTGCGCTACGGTCACGTGCATGCCACTCGCGTGCACCTCGAAACCGGAGAATCCAGCATGCAGGGATTTGAAGACTTACCCTTCCACCGTGTTTGGACCCACTTGCGACTCTATCGATACCGTTCTGAGGGATTACCAGCTCCCGGAACTGCAAGTCGACGATTGGGTTGTGTTTCCTAACATGGGTGCATATACGACGTCGTCGGGGACTAACTTCAATGGGTTTAGCTCCTCAGCCAAGTCCACATTCCTTGCATATTCCTGCAAGTGA 1263 0.5519 MPTLVAEDSPNILCASGIKGKRVTTLSAEENGLSLTDFIQTIINAESSSNIDSPFSVLDLGVVMGLMNKWATKLPTVQPFYAVKCNPNLSLIGALAALGSSFDCASKAEIDSVLSLGVSPDRIIYANPCKSESHIRYAATVGVNVTTYDSRDEVEKIRKCHPTCDLLLRIKPPQESGAQISLGLKFGALPEEVPELLKAAHEAGLKVIGVSFHVGSGGADMRAYQGAISAAKGVFDTASRLGLPRMRILDVGGGFTSGPLFDAAALKINAAIEASFGNEKGLAVIGEPGRYFAETAFTLASRVIGKRVRGEVREYWIDDGIYGTLNNIVFDCATVTCMPLACTSKPENPACRDLKTYPSTVFGPTCDSIDTVLRDYQLPELQVDDWVVFPNMGAYTTSSGTNFNGFSSSAKSTFLAYSCK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0186 420 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 81 99 IPR022653 -
Aed9g0186 420 SUPERFAMILY PLP-binding barrel 52 296 IPR029066 -
Aed9g0186 420 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 294 393 IPR022643 GO:0003824
Aed9g0186 420 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 34 418 IPR002433 GO:0006596
Aed9g0186 420 SUPERFAMILY Alanine racemase C-terminal domain-like 278 408 IPR009006 GO:0003824
Aed9g0186 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 204 217 IPR000183 GO:0003824
Aed9g0186 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 101 113 IPR000183 GO:0003824
Aed9g0186 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 284 303 IPR000183 GO:0003824
Aed9g0186 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 81 99 IPR000183 GO:0003824
Aed9g0186 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 393 406 IPR000183 GO:0003824
Aed9g0186 420 CDD PLPDE_III_ODC 52 410 - -
Aed9g0186 420 Gene3D Alanine racemase 63 292 IPR029066 -
Aed9g0186 420 PANTHER ORNITHINE DECARBOXYLASE-LIKE 34 418 - -
Aed9g0186 420 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 66 293 IPR022644 GO:0003824
Aed9g0186 420 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 50 410 IPR009006 GO:0003824
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 79 106 IPR002433 GO:0006596
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 319 332 IPR002433 GO:0006596
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 123 147 IPR002433 GO:0006596
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 380 393 IPR002433 GO:0006596
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 360 370 IPR002433 GO:0006596
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 153 175 IPR002433 GO:0006596
Aed9g0186 420 PRINTS Ornithine decarboxylase signature 53 77 IPR002433 GO:0006596
Aed9g0186 420 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 239 256 IPR022657 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0186 K01581 - gmx:548088 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0186 9 1342878 1344140 Aed9g0186 9 1342878 1344140 ECH