Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0176 ATGGCCTTCGCCACCAGCGCTTTGCTTTCTTCAAACTTCCTCGGAAGGAAGATTCTAGTATCGCCCCCAACCCCCAAAACAACGAAACCATCCACTCCATTACCCTTCATCTTAAACGCTCGCAAGCACAATTCAGAACAACTCAAATCCGCATCTTCACAAGCTGCTTTAGCGGCCCTTATCGTTTCATCCGCTGTGACAGTGACCCCACAAGCCCTAGCCGCAGCTGATAACGTCACCGTCACCCCTCCTCCCACCGTAATCGAAGCCCAACAGAGCCAATCAAACTCATCATCATCCCCTTTCTCTCAGAACCTTCTCCTCACAGCGCCAAAGCCCCAACCCTCTTCGGACCTCCCCGACGGCACCAATTGGCGCTACAGCGAGTTCCTTAACGCCGTCAAGAAGGGTAAAGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCCGCCCTCCAACTAACCGCCGTCGACGGCCGTCACGCCTCCGTTATTGTCCCCAATGACCCCGACCTCATCGACATCCTTGCCATGAACGGCGTCGACATCTCCGTCGCCGAAGGGGAGTCTCCCAACAGCCTGTTCAACATCATAGGCAACTTGCTGTTCCCCATCCTCGCATTCGCCGGCCTGTTCTTCCTCTTCCGCAGAGCCCAGGGCGGGCCCGGTGGGCCTGGAGGGATGGGCGGGCCCATGGACTTCGGCCGTAACAAGTCCAAGTTCCAAGAAGTCCCCGAGACCGGTGTGAGCTTCGCTGACGTGGCGGGCGCTGACCAAGCCAAGCTGGAGCTCCAGGAGGTCGTTGATTTTTTGAAGAATCCCGATAAGTACACCGCGCTTGGCGCGAAGATTCCGAAGGGGTGTCTATTGGTGGGGCCACCGGGAACCGGGAAGACCCTTCTGGCCAGAGCAGTGGCAGGGGAAGCTGGGGTGCCGTTTTTCTCGTGCGCGGCTTCGGAGTTCGTGGAACTTTTTGTGGGAGTTGGTGCGTCTCGTGTGAGGGATTTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGACGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTCGGTGGCGGGAACGATGAGAGGGAACAGACTATTAACCAGCTTCTCACGGAGATGGATGGCTTTTCTGGTAATTCCGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGACGTTCTTGATTCTGCGTTGTTGAGACCTGGCCGGTTCGATAGGCAAGTTACTGTCGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGACTTTGATAAAATTGCAAGGAGAACCCCTGGATTCACTGGGGCTGATCTGCAGAATTTGATGAATGAGGCGGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCCGAGAAGAAAAATGCTGTAGTCTCCGATGAGAAGAAGAAACTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGCGCTTTAATGCCAGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGCTACCTCGAAAACCAGATGGCTGTTGCCCTGGGTGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGAAAATGTCACCACCGGAGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCGAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCCGGTGGAAATCCCTTCTTGGGTCAGCAGATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATATAGTGGATGCGGAAGTGCGGGAACTGGTAGAGAGAGCCTATTCTAGGGCAACGCAGATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATCGATGGAAAAGCCGAATTATATGTTGCATAA 2118 0.5236 MAFATSALLSSNFLGRKILVSPPTPKTTKPSTPLPFILNARKHNSEQLKSASSQAALAALIVSSAVTVTPQALAAADNVTVTPPPTVIEAQQSQSNSSSSPFSQNLLLTAPKPQPSSDLPDGTNWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRHASVIVPNDPDLIDILAMNGVDISVAEGESPNSLFNIIGNLLFPILAFAGLFFLFRRAQGGPGGPGGMGGPMDFGRNKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADIVDAEVRELVERAYSRATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0176 705 Gene3D - 238 420 IPR027417 -
Aed9g0176 705 Gene3D Peptidase M41 497 700 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed9g0176 705 PANTHER METALLOPROTEASE M41 FTSH 49 697 - -
Aed9g0176 705 Gene3D - 120 194 - -
Aed9g0176 705 CDD AAA 254 419 - -
Aed9g0176 705 Pfam Peptidase family M41 501 694 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed9g0176 705 Pfam AAA+ lid domain 442 485 IPR041569 -
Aed9g0176 705 Pfam ATPase family associated with various cellular activities (AAA) 288 419 IPR003959 GO:0005524|GO:0016887
Aed9g0176 705 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 193 694 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed9g0176 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 491 IPR027417 -
Aed9g0176 705 MobiDBLite consensus disorder prediction 89 121 - -
Aed9g0176 705 ProSitePatterns AAA-protein family signature. 390 408 IPR003960 GO:0005524|GO:0016887
Aed9g0176 705 Gene3D - 421 496 - -
Aed9g0176 705 SMART AAA_5 283 422 IPR003593 -
Aed9g0176 705 SUPERFAMILY FtsH protease domain-like 501 695 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed9g0176 705 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 705 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed9g0176 705 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 49 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0176 Aed-Chr9 1259023 1262636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0176 243 696 Miscellaneous Gene Families AT5G53170 49.561 1.88e-135 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0176 K03798 - gmx:100807408 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0176 9 1259023 1262636 Aed9g0176 9 1259023 1262636 ECH