Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0158 ATGGACCTTCGGCTAGGGTTTTTCCGTTCACTATCTTTCTTGCAGGTGTTTCTAATTTTATCTTTGGTAGAAGCAGACATTTTGTCCACAAGGTTTCTTTTGACTTCCAATGCCAACACAACGGGGGAAAGGCATTCCGAGGATTATTGTGCAATGTATGACATCTGTGGAACGCGTAGTGATGGTAAAGTAGTGAACTGTGCGTATGGTTCCCCGGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAACATTTGTTGTACAGAAGCTCAGTTTGAAACATTAAGGACGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTGTTCTGTGAGCTTACATGTTCTCCGAACCAGAGTTTATTTATCAATGTGACTTCAGTTGACAATGTTGGTGGTAATTTGACAGTGGGTGGGATTGATTATTTTGTAACTGATGCTTTTGGTGAAGGCTTATATGAATCCTGCAAGGAGGTAAAGTTTGGCACTATGAATTCTCGAGCTCTACAATTTATTGGTGCTGGTGCGCAAAATTTTAAAGAATGGTTTGCTTTTATTGGTAGAAAAGCTGCCCCTCATGGTCTTGGTTCACCATATGCAATTACATTCTGGCCAAATGCAACCGAGTCATCTGGCATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATTTTTCTCTCGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAATTCAGCTTCAACTACCACCGATAAGAAGGATTCCTGCTCTGTGAAAGTTGGGACTTTAATGGTGAAGTGTGTTGACTTGATTTTAGCAGTCTTATACATTATACTGATTTGTGCATTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAACCGACATACAGAACAAAATCAGTGTCTAATGTCATTAGTGATGGTGCCCTGTATTCTCATAACAGGGACAAGGATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGTTCAACAAAACAAAAATGGAGTCCGGCTCTCGGCTGTACAACGATATATGACAAATTTTTACAGGAAATATGGATCATATGTAGCTAGACATCCAATTATGGTGTTGGCTTCATCTCTGGCTATAGTTCTTCTTCTCTGTCTAGGTCTAATCCAATTCAAGGTTGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAGCAGTTCTTTGACACTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATTCTGGCAACAGTTCCAGATCATGTGAATAGTACATCACCAAGAATTGTGTCAGAGGACAACATGAAGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGACGGTATCTCTCCAAGACATCTGTATGAAGCCACTAGACACAGATTGTGCCACCCAAAGTGTCCTTCAGTACTTCAAAATGGATCCCCAAAATTTTGATGATTATGGAGGAGTAGACCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGACCAATGTATGAGTGCATTTAAAGCTCCTCTTGATCCAAGCACTGTATTAGGAGGTTTTTCTGGGAATGATTATTCTGGGGCATCTGCGTTCATTGTAACATATCCAGTAAATAATGCAATTAATGAAGAAAGTAATGGAACCAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTAAAGGATGAGCTGTTACCGATGGTACAATCAAGAAATTTGACACTGGCTTTTTCATCTGAAAGCTCTGTTGAGGAAGAATTGAAAAGAGAAAGTACTGCAGATGCTATTACTATATTGGTTAGCTATCTTGTGATGTTTGCTTATATCTCTCTTACTTTAGGGGATACACTCCATCCTTCGTCTTTCTATATTTCCTCTAAGGTGATGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTGTCTGTCCTTGGATCGGTTGGATTTTTTAGTGTGCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTGGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAAAAGCTGGAGTTGCCCTTAGAAGGACGAATAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACATTGGCCAGTGTATCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCAATGCCTGCAATCCGCGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTCCTCCTGCAAGTTACTGCTTTTGTAGCTCTGATAGCTCTTGATTCTCTGCGAGCAGAGGATAAGAGGGTTGATTGTTTTCCATGTGTAAAAGTGCATGCGGACCCTGATATAGGTGGACGAAGAAAACCTGGTTTATTGGGTCGATACATGAAGGAGGTTCATGCTCCCATACTGAGTATTTGGGGAGTAAAACTAGTTGTCATAGCTATTTTTGTGGGATATGCATTGGTTAGCATTGCATTGAGCACTAGAATTGAACCTGGTTTAGAGCAAGAGATTGTTCTTCCTCGGGATTCATATCTTCAGGGTTATTTCAATAATGTTTCAGAATATCTCAGAATTGGACCTCCTGTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCGGCCCTAGTACCAGATACAAGTTATATTGCTAAGCCAGCTGCCTCATGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGCTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTCAGGAAAGCTCTTGTGTTTCCGTAGGAACATGCAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCGTAATGATCGTCCATCTACAGCACAATTTAGGGAGAAACTGCCTTGGTTTCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACCAGCAGTGTTGAACTGAAAGGCTATGACAATGGCATTATTCCAGCATCGTCATTCCGTACTTATCATACCCCACTCAACAAGCAGATTGACTACATTAATTCTATGAGGGCTGCTCAAGAGTTCAGTTCAAGAGTTTCTGATTCTTTAAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATATCTTCATATATGGAAGACTGCACTGGTCAACCTTGCTATAGCCATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACGAGCAGTTTATGGAGTTCATCAATCATTTTGTTGGTGTTGGCAATGATTGTCGTTGATCTTATGGTAGCAAGTGGAAACAGAGACCAACGTGTTAAGGAGGCATTGGGTACTATGGGTGCTTCAGTTTTCAGTGGTATTACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTGTTTGTGATTTATTACTTTCGGATGTACTTGTCATTGGTACTTCTTGGTTTCTTGCATGGACTTGTTTTCTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGCATGGAGCAAGGGGAAGATCGTTCATCAACTTCTTCATAG 3756 0.4065 MDLRLGFFRSLSFLQVFLILSLVEADILSTRFLLTSNANTTGERHSEDYCAMYDICGTRSDGKVVNCAYGSPAVKPDDLLSSKIQSLCPTITGNICCTEAQFETLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDNVGGNLTVGGIDYFVTDAFGEGLYESCKEVKFGTMNSRALQFIGAGAQNFKEWFAFIGRKAAPHGLGSPYAITFWPNATESSGMKPMNVSTYSCGDFSLGCSCGDCPSSSVCSNSASTTTDKKDSCSVKVGTLMVKCVDLILAVLYIILICAFLGWGLYHRIRERKPTYRTKSVSNVISDGALYSHNRDKDENLPMQIHMMEDVQQNKNGVRLSAVQRYMTNFYRKYGSYVARHPIMVLASSLAIVLLLCLGLIQFKVETRPEKLWVGPGSKAAQEKQFFDTHLAPFYRIEQLILATVPDHVNSTSPRIVSEDNMKFLFEIQKKVDAIRANYSGLTVSLQDICMKPLDTDCATQSVLQYFKMDPQNFDDYGGVDHLNYCFEHYSSADQCMSAFKAPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAINEESNGTRKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSSFYISSKVMLGLSGVILVMLSVLGSVGFFSVLGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQKLELPLEGRISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIALDSLRAEDKRVDCFPCVKVHADPDIGGRRKPGLLGRYMKEVHAPILSIWGVKLVVIAIFVGYALVSIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPVYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPQESSCVSVGTCKDCTTCFRHSDLRNDRPSTAQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYDNGIIPASSFRTYHTPLNKQIDYINSMRAAQEFSSRVSDSLKIEIFPYSVFYMFFEQYLHIWKTALVNLAIAIGAVFIVCLVITSSLWSSSIILLVLAMIVVDLMVASGNRDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCMEQGEDRSSTSS 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0158 1251 Gene3D Multidrug efflux transporter AcrB transmembrane domain 583 800 - -
Aed9g0158 1251 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Aed9g0158 1251 Pfam Patched family 1164 1233 IPR003392 GO:0016021
Aed9g0158 1251 Pfam Patched family 424 906 IPR003392 GO:0016021
Aed9g0158 1251 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 1160 1250 - -
Aed9g0158 1251 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 1159 - -
Aed9g0158 1251 PANTHER PATCHED FAMILY PROTEIN 1160 1250 - -
Aed9g0158 1251 PANTHER PATCHED FAMILY PROTEIN 6 1159 - -
Aed9g0158 1251 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1159 IPR004765 GO:0005319|GO:0016021
Aed9g0158 1251 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Aed9g0158 1251 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1079 1234 - -
Aed9g0158 1251 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 608 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0158 Aed-Chr9 1128332 1146371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0158 44 1251 Miscellaneous Gene Families AT1G42470 70.208 0.0 1753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0158 K12385 - gmx:100813262 2329.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0158 9 1128332 1146371 Aed9g0158 9 1128332 1146371 ECH