Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0100 ATGGCCAATGGAGACAGCAATGGTAGAGTGAATCCACTACCTAACCTGCAAAGGTCTTACCAAGTGGTAGTGGCTGCCACTCAAGATTGGGGCATAGGTAAGGATGCGAAATTACCCTGGAGACTGCCTACTGATCTCAAATTTTTTAAGGAGATAACTATGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTAAGCACAGACCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACGGCAGAGAATGTTGTTATATGTGGAAGTATGTCTTCTGCATTGGAACTATTAGCTGCTTCCCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGCATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATATTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTCTTTCACCACTTATGTGTGTGTAAGGAGTTCTGCTGTGGAGCCCCCGAGTCAGAATATTGATCCGCCTTTTGATAATAGTTCTGATTCCATAAAATTTGAGGTCAAGGATTTTTCTTTTCTTCCTAAAATGATTTTTGATATACATGAGGAGTATATGTATCTTAAGCTGGTTCAAGACATCATTTCTGAAGGTACAACCAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTAGCCAGATGAGGTTCAATCTGCGCAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGAGAGGGGTTGTTGAGGAGCTTCTTTGGTTTATTAGTGGCTCAACAAATGCCAAGTACTTACGGCAGAATGTTAAGATATATAACAAAAAGAGTGTTGGTTTGACAGAGAGAGAGGAGGGAGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATGATGACTACTCCGACCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAAGCCTGATGATCGGCGAATCATTCTCTCTGCATGGAATCCAGCTGATCTTAAATTGATGGCACTTCCTCCCTGCCACATGTTTGCACAGTTTTATGTAGCAAACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATGTTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGATCTCACTCCAGGCGATTTTATCCATGTTATTGGGGATGCACATGTTTATCGCAATCACATGAGGCCTTTGCAGGAGCAGCTCCATAACCTGCCAAAACCTTTTCCAACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGATGGCTGTCTAA 1548 0.4173 MANGDSNGRVNPLPNLQRSYQVVVAATQDWGIGKDAKLPWRLPTDLKFFKEITMKTSDPGKKNAIVMGRKTWESIPLKHRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTIFRPWYSSFPKVENNIRYSFTTYVCVRSSAVEPPSQNIDPPFDNSSDSIKFEVKDFSFLPKMIFDIHEEYMYLKLVQDIISEGTTKDDRTGTGTLSKFGSQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKYLRQNVKIYNKKSVGLTEREEGDLGPVYGFQWRHFGARYTDMHDDYSDQGFDQLLDVINKIKHKPDDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNVASYALLTCMIAHVCDLTPGDFIHVIGDAHVYRNHMRPLQEQLHNLPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKMAV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0100 515 PRINTS Thymidylate synthase family signature 448 465 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 PRINTS Thymidylate synthase family signature 366 385 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 PRINTS Thymidylate synthase family signature 410 436 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 PRINTS Thymidylate synthase family signature 281 302 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 PRINTS Thymidylate synthase family signature 392 407 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 Pfam Thymidylate synthase 242 515 IPR023451 -
Aed9g0100 515 SUPERFAMILY Dihydrofolate reductase-like 13 195 IPR024072 -
Aed9g0100 515 TIGRFAM thym_sym: thymidylate synthase 328 515 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 Pfam Dihydrofolate reductase 21 194 IPR001796 GO:0004146|GO:0046654
Aed9g0100 515 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 19 196 IPR001796 GO:0004146|GO:0046654
Aed9g0100 515 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 234 515 IPR036926 -
Aed9g0100 515 ProSitePatterns Thymidylate synthase active site. 377 405 IPR020940 GO:0004799|GO:0006231
Aed9g0100 515 CDD TS_Pyrimidine_HMase 243 468 IPR023451 -
Aed9g0100 515 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 4 515 - -
Aed9g0100 515 PIRSF DHFR-TS 5 515 IPR012262 GO:0004146|GO:0004799|GO:0006730
Aed9g0100 515 Gene3D Dihydrofolate Reductase, subunit A 7 198 IPR024072 -
Aed9g0100 515 Hamap Thymidylate synthase [thyA]. 240 515 IPR000398 GO:0004799|GO:0006231
Aed9g0100 515 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 31 53 IPR017925 GO:0004146
Aed9g0100 515 PANTHER THYMIDYLATE SYNTHASE 1 4 515 IPR045097 GO:0016741
Aed9g0100 515 CDD DHFR 23 195 IPR001796 GO:0004146|GO:0046654
Aed9g0100 515 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 228 515 IPR036926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0100 Aed-Chr9 713508 718324 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0100 K13998 - gmx:547833 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0100 9 713508 718324 Aed9g0100 9 713508 718324 ECH