Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0081 ATGAGTTCTGACAGCCGCAGCAGAAGCAGGAGCAGAAGCAGGAGCCCAATGGACCGTAAGATCCGCTCTGATCGATTTTCCTATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAGAGGCCTGGACATTATGCAAGAGAATGCCCTAATGTTGCAATTTGCCACAACTGTGGCCTCCCTGGGCACATTGCTTCTGAATGTACTACAAAGTCACTGTGCTGGAACTGTAAAGAACCTGGCCACATGGCCAGCAATTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAGCTGGACACCGTGCCAGGGAATGCACAGCTCCTCCAATGCCTCCGGGGGACTTAAGGTTGTGCAACAACTGTTATAAGCAGGGGCACATTGCAGTTGAATGTACGAATGAGAAGGCATGCAACAACTGTAGGAAGACAGGCCACTTGGCACGTGATTGTCCTAATGATCCTATTTGTAATATGTGCAATGTTTCTGGGCATGTGGCCAGACAGTGTCCAAAAGCCAATGTTATTGGAGACCGTAGTGGCGGCAGCGGTGGTGGCGGTGTTCGTGGTGGCGGTGGCTACAGAGATGTTGTTTGCAGGAACTGTCAGCAATTAGGTCACATGAGTAGGGATTGCATGGGCCCCTTGATGATTTGCCACAATTGTGGAGGTCGTGGTCACCTGGCATATGAGTGCCCTTCGGGTCGGTTTATGGACCGCTACCCCAGGAGGTACTGA 771 0.5136 MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNMCNVSGHVARQCPKANVIGDRSGGSGGGGVRGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0081 256 Pfam Zinc knuckle 129 146 - -
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 230 245 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SUPERFAMILY Retrovirus zinc finger-like domains 202 247 IPR036875 GO:0003676|GO:0008270
Aed9g0081 256 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Aed9g0081 256 Gene3D - 204 247 - -
Aed9g0081 256 SMART c2hcfinal6 209 225 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 229 245 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Gene3D - 103 147 - -
Aed9g0081 256 Gene3D - 148 196 - -
Aed9g0081 256 Gene3D - 8 81 - -
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 ProSiteProfiles Zinc finger CCHC-type profile. 210 223 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 168 183 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 209 223 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 229 245 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Aed9g0081 256 PANTHER OS10G0545300 PROTEIN 1 256 - -
Aed9g0081 256 SUPERFAMILY Retrovirus zinc finger-like domains 37 82 IPR036875 GO:0003676|GO:0008270
Aed9g0081 256 Gene3D - 82 102 - -
Aed9g0081 256 PANTHER - 1 256 - -
Aed9g0081 256 MobiDBLite consensus disorder prediction 1 29 - -
Aed9g0081 256 SUPERFAMILY Retrovirus zinc finger-like domains 125 165 IPR036875 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0081 K09250 - gmx:100803820 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0081 9 580711 585674 Aed9g0081 9 580711 585674 ECH