Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0078 ATGAGTTTCACTACCGTGCTTCTTCTTCTACTTGTTCTTGTTCTTTTCGTAAATTCAGGAAGCGCTCATAATTACGAGGAGGCATTGTCGAAGGCAATCCTGTTCTTCGAGGGACAACGTTCGGGTTTCTTGCCGCAGGACCAGAGACAGAACTGGCGCGCCAATTCGGGCCTGAGTGACGGCTGGACCTACAACGTGGACCTCACCGGCGGCTACTACGACGCCGGCGACAACATCAAATTTGGGTTTCCGATGGCATTCACGACCACAATGCTGGCCTGGAGCGTCATTGAATTCGGAGACATGATGCCTTCCGATCAACACCGAAACGCGCTCGTCGCAATCCGTTGGGCCACCGACTATTTGCTCAAAACCATTTCACAGCCAAACCGCATTTTCGTTCAGGTGGGTGATCCAATCTCTGACCACAATTGTTGGGAAAGGCCCGAGGACATGGACACAAGCAGGACAGTGTATGCTGTAGATGCACCAAACCCAGCTTCAGATGTAGCTGGTGAAACTGCTGCGGCACTAGCTGCTGCATCAATGGCTTTTCGTTCATCTGATCCTTCTTATTCTGAGACTTTGCTTCGAAATGCTGCTAAGGCCTTTCAATTTGCAGATAACTATAGGGGTGCCTACAGCGACATTCCTAATATTAAAAATGGTGCATGCCCTTATTACTGTGACTTCGATGGTTATCAGGACGAATTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACTCAGGACGAAAATTTCCTCAACTACATTCAAAGCAATGCCAAAACGCTTGGTGCTGAAGACAATATCAATGAGTTTGGTTGGGACAACAAGCATGCTGGCCTTAATGTTCTTGTCTCCAAGGAAGCTGTAGAAGGAAACGTAATGTCTCTTGAATCCTACAAGACTTCAGCAGAGAGCTTTCTCTGCACACTGATACCCGAAACATCAAGTTCACACATTGAGTACACTCCTGGTGGACTCATATACAGGCCTGGTGGCAGCAACTTACAACATGCAACTTCAATTGCATTCCTTGAATTGGTTTACGCCAATTACCTATCTCGCACTTCACAAACCATCAACTGTGGGAACATCTATGTTAACGCACAAACACTTCGCCAGCATGCTAAGAAGCAAGTTGATTACATTTTGGGCGATAACCCAATGGGTATGTCCTACATGGTTGGCTACAGCAACAAGTACCCACAGCGTATTCACCATCGTGGCTCCTCTTTACCCTCTATTAAGGACCATCCTCAGTTCATTGCCTGCAAAGAAGGATCAATTTACTACAATTCAACTAATCCTAATCCTAATGTTCTTGTGGGAGCCATTGTGGGAGGACCCGGAGAAGATGATATGTTTGAGGATGATAGGGCTGATTTTAGGAAGTCCGAACCAACCACGTACATTAATGCACCGTTTGTTGGGATTTTAGCATACTTTGTTGCTAATCCCAACCCTTGA 1473 0.4678 MSFTTVLLLLLVLVLFVNSGSAHNYEEALSKAILFFEGQRSGFLPQDQRQNWRANSGLSDGWTYNVDLTGGYYDAGDNIKFGFPMAFTTTMLAWSVIEFGDMMPSDQHRNALVAIRWATDYLLKTISQPNRIFVQVGDPISDHNCWERPEDMDTSRTVYAVDAPNPASDVAGETAAALAAASMAFRSSDPSYSETLLRNAAKAFQFADNYRGAYSDIPNIKNGACPYYCDFDGYQDELLWGAAWLRRATQDENFLNYIQSNAKTLGAEDNINEFGWDNKHAGLNVLVSKEAVEGNVMSLESYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNIYVNAQTLRQHAKKQVDYILGDNPMGMSYMVGYSNKYPQRIHHRGSSLPSIKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPGEDDMFEDDRADFRKSEPTTYINAPFVGILAYFVANPNP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0078 490 Pfam Glycosyl hydrolase family 9 25 481 IPR001701 GO:0004553|GO:0005975
Aed9g0078 490 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 457 475 IPR033126 -
Aed9g0078 490 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 384 410 IPR018221 -
Aed9g0078 490 Gene3D - 21 488 IPR012341 GO:0005975
Aed9g0078 490 SUPERFAMILY Six-hairpin glycosidases 5 486 IPR008928 GO:0005975
Aed9g0078 490 PANTHER ENDOGLUCANASE 24 5 489 - -
Aed9g0078 490 PANTHER ENDO-1,4-BETA-GLUCANASE 5 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0078 Aed-Chr9 545061 549007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0078 1 487 Glycoside Hydrolase AT1G70710 58.932 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0078 K01179 - gmx:100799911 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0078 9 545061 549007 Aed9g0078 9 545061 549007 ECH