Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0042 ATGGGTTTCTTTAGCACCATATTTGGTTTCTTTGGTTTTGGAATTGGGATTTCTATTGGTCTCGTTGCTGGCTATTTTCTCTTTATTTACGTTGAACCCACTGATGTTAAGGATCCTGAAATCAAGCCATTGGCAGAGGAAGACCCAGAAACTTTACAGCGAATGATTCCTGAGATACCACTTTGGATAAAAAATCCAGACTTTGACCGTGTTGATTGGCTTAACAAGCTTATTGAATGTATGTGGCCATACCTTGACAAGGCAATATGTAAGACTGCAGAGAATATTGCAAAACCAATAATTGCTGAGCAAATACCTCAATATAAAATTGATTCTGTTCAGTTTGAAGAGCTCACACTAGGGTCCCTACCGCCAACTTTTCAAGGAATGAAAGTTTACGAGACTGAAGAGAAAGAGCTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTGCTGTTAAGAAATTTGGGTTGAAAGCAACCGTCCAGGTGCTGGATTTGCAAGTTTTTTTTGCACCTCGTATTACTTTGAAACCTTTGGTTCCGAGTTTTCCATGCTTTGCAAATATCTACGTGTCTCTCATGGAAAAGCCACATGTTGACTTCGGGCTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGCCTCTATAAGTTTGTCCAGGAGTTTATCAAAGATCAAGTTGCAAATATGTATTTATGGCCCAAAACCTTGGAAGTTCAAGTTATAGACCCAACAAAAGCCTTGAAGAGGCCTGTTGGAATTTTAAATACAAAGGTTGTGAAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTACGTGAAGCTAACACTTACTGAAGATAATCTGGCGTCAAAAAAGACTACTGTGAAGCATAAAAACTTGAATCCAGAATGGAATGAGGAATTTAGTTTGGTTGTTAAAGATCCTGAGTCTCAGGCTTTAGAACTTCTTGTCTATGACTGGGAGCAGGTTGGGAAGCACGACAAGATGGGTATGAATAGGATTCCTTTGAATAAACTTTCGCCTGAAGAGCCTAAAGTTTTTACTCTTGAACTCCTAAAAAACATGGATCCCAATGATGCCCAAAATGACAAGTCTCGTGGGCAAATTGTTCTGGAATTGACGTATAAACCCTTCAGAGAGGAAGACTTGGCCAAGGGTTTTGATAAGGCACAACCAATACAAAAACCCCCTCAAGGCACTCCTCCTGGTGGGGGTCTTCTTGTAATTATAATCCATGAAGCTCAAGACATTGAAGGAAAGTATCATACCAATCCACATGTACGTCTTATTTTTAGAGGGGAAGAAAAGAGAACTAAGGAGTTCCAATTTCTAGTAGAAGAACCTCCCACTAATGATAAATTCCACGTAGAGGTTGTTAGCACTTCATCACGAAGCCTTCTACGTCAAAAGGAATCATTGGGTTATGCTGACATCAGTCTTGCGGATGTTGTTACCAACAATAGAATCAACGAGAGGTACCATCTTATAGACTCCAAGAATGGTCGCATCCAGATTGAGCTACAATGGAGAGCTTCATAA 1578 0.3999 MGFFSTIFGFFGFGIGISIGLVAGYFLFIYVEPTDVKDPEIKPLAEEDPETLQRMIPEIPLWIKNPDFDRVDWLNKLIECMWPYLDKAICKTAENIAKPIIAEQIPQYKIDSVQFEELTLGSLPPTFQGMKVYETEEKELIMEPSVKWAGNPNVTVAVKKFGLKATVQVLDLQVFFAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYKFVQEFIKDQVANMYLWPKTLEVQVIDPTKALKRPVGILNTKVVKAMKLKKKDLLGASDPYVKLTLTEDNLASKKTTVKHKNLNPEWNEEFSLVVKDPESQALELLVYDWEQVGKHDKMGMNRIPLNKLSPEEPKVFTLELLKNMDPNDAQNDKSRGQIVLELTYKPFREEDLAKGFDKAQPIQKPPQGTPPGGGLLVIIIHEAQDIEGKYHTNPHVRLIFRGEEKRTKEFQFLVEEPPTNDKFHVEVVSTSSRSLLRQKESLGYADISLADVVTNNRINERYHLIDSKNGRIQIELQWRAS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0042 525 CDD C2 265 364 - -
Aed9g0042 525 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Aed9g0042 525 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 523 IPR035892 -
Aed9g0042 525 SMART C2_3c 261 361 IPR000008 -
Aed9g0042 525 SMART C2_3c 419 505 IPR000008 -
Aed9g0042 525 Gene3D C2 domain 419 524 IPR035892 -
Aed9g0042 525 Gene3D C2 domain 256 408 IPR035892 -
Aed9g0042 525 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 524 IPR045050 GO:0008289
Aed9g0042 525 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Aed9g0042 525 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 524 - -
Aed9g0042 525 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Aed9g0042 525 PRINTS C2 domain signature 304 317 IPR000008 -
Aed9g0042 525 PRINTS C2 domain signature 277 289 IPR000008 -
Aed9g0042 525 PRINTS C2 domain signature 326 334 IPR000008 -
Aed9g0042 525 Pfam C2 domain 260 358 IPR000008 -
Aed9g0042 525 Pfam C2 domain 420 508 IPR000008 -
Aed9g0042 525 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0042 Aed-Chr9 281154 290122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0042 255 515 Lipid Metabolism Gene Families AT3G61300 25.597 2.37e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0042 - - gmx:100780850 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0042 9 281154 290122 Aed9g0042 9 281154 290122 ECH