Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0021 ATGAAGAAGAAGAGCAGCAGCAGTAGTAGTAGTTCAGTTTATGAGGCGAATGGAGTGGAGGATGAGGTTGAACCTCAAGGACCTTCTTCATCTTGTGCTCTCGTTGAGTTGCAGTATGAGAATGGAGAACAAACCCTCGTGCCTCCCCATCCCAATCCCAATCTTGACGATGGCTTCTATGAAATTGAAACCATACGCCGTAAGAGGCTACGCAAGGGTCAGGTGCAGTTCCTAATAAAATGGTGTGGATGGCCCGAGACTGCCAACACTTGGGAGCCTCTTGAAAATCTACAGTCCGTTCCTGATCTCATTGATGCTTTTGAGGAAAGCCTCAAGTCAGGTAAACATCGCAAGCGTAAGCGCAAACATGTGGATGTGGTTCAACACACTCAACTCAAGAAGCGCTCCGAACGTTCTACCACTTCCTACAGCCTTAGACATTTCCCACCTCAAACCAATGCAATTACTACTGATTATGATCCAAAGCTCAGTGAACTTAAGGCACCACCATCAAACACTACTGGCCATGTTGATCAGCTAGATAACCACCTTGCAATACATTTCCAACAACCAATTCAAACTGGCCGCTGCTGCAGAGGAGCAAAAAGGAGAAAATCTGCATCTGTCAAGAGGTTCAAGAGAGACACGCAAACAGATGCACTTCAACCAGCAGCCTGCACGCCAATTTCTGGTCCTATCAAGATGGCTGATGCTAATACTGCCTGCAATATTGTCAAGATTATAAAGCCAATAGGCTATACAGCTTCTTTATCTGACAACATGCACGATGTTTTAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTGGATAACAGATATCTCAAGGCATACAATCCGCTTCTGCTGATCAATTTCTATGAGATGCATCTCCGTTATACTCCTACACCGTGA 924 0.4524 MKKKSSSSSSSSVYEANGVEDEVEPQGPSSSCALVELQYENGEQTLVPPHPNPNLDDGFYEIETIRRKRLRKGQVQFLIKWCGWPETANTWEPLENLQSVPDLIDAFEESLKSGKHRKRKRKHVDVVQHTQLKKRSERSTTSYSLRHFPPQTNAITTDYDPKLSELKAPPSNTTGHVDQLDNHLAIHFQQPIQTGRCCRGAKRRKSASVKRFKRDTQTDALQPAACTPISGPIKMADANTACNIVKIIKPIGYTASLSDNMHDVLVTFMAMRSDGTEVMVDNRYLKAYNPLLLINFYEMHLRYTPTP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0021 307 Pfam Chromo (CHRromatin Organisation MOdifier) domain 60 109 IPR023780 -
Aed9g0021 307 MobiDBLite consensus disorder prediction 142 157 - -
Aed9g0021 307 MobiDBLite consensus disorder prediction 1 16 - -
Aed9g0021 307 SMART ChS_2 233 306 IPR008251 GO:0005634
Aed9g0021 307 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 156 306 - -
Aed9g0021 307 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 24 140 - -
Aed9g0021 307 Gene3D - 53 126 - -
Aed9g0021 307 ProSiteProfiles Chromo and chromo shadow domain profile. 60 119 IPR000953 -
Aed9g0021 307 MobiDBLite consensus disorder prediction 1 31 - -
Aed9g0021 307 SUPERFAMILY Chromo domain-like 47 117 IPR016197 -
Aed9g0021 307 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 156 306 IPR044251 GO:0006325|GO:0031507
Aed9g0021 307 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 24 140 IPR044251 GO:0006325|GO:0031507
Aed9g0021 307 SMART chromo_7 59 112 IPR000953 -
Aed9g0021 307 ProSitePatterns Chromo domain signature. 77 97 IPR023779 -
Aed9g0021 307 MobiDBLite consensus disorder prediction 132 157 - -
Aed9g0021 307 CDD CD_CSD 60 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0021 Aed-Chr9 143131 148188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0021 - - gmx:100788091 429.483