Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0020 ATGTCGTGTTTGTTGCCGCACTTCAACTGCCACCTCGACACTTTCAGGACTCATCCCTATGCTCTTCCTACCCATCTGTATGCCCCTTCTGATCCAAACACGTCTTGGCCCTATATCGCTGCACAGTCACAGACAAACTTTAAATCAACCTTATCTGCGGAATCACTTCTTACTAATGAAGAGGCTGTAATAGCTGCTGCTGCGGCTGAAGCTCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAAGATGCAGCTTTACTAGTAAAAAAGAAGCCTCCAGCAGAAGCAGAGTATAAATCCCAGGTTTCTTCCAAATCTGATGATTTACTTCTCAAATGGTTTCAACAAATGGAAGCGGAAGATGGTTTAGCAGGAGAATCCATGGGTGCTGGAGCAGAAATAATGGAAGGTGTTGACGTAAGCCCCAGCGAAGAGGAATCCGATGTAGTAGAGCCTTCCGATGAGGAACTTGAGCGTCTGCAGGAACAGCTTTCCAACAGTATAGCTGTAAGATCTAGGCGCCAAACAGAAAGAAAAGCTAAAAGAGACAGAGCAGCAGAGAAGGCTACCACAAATTTTGCATCTTTTAAGCCTGGCTACTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACAACTAGCGCTTCTAGGCTTCTTACTCCAACTGAAGAAATCAAGTTGTCAGCAGGAATACAGGACCTTCTGAAGCTTGAAAAAATTCAGGAGGATCTTGTAGAAAGATTTGGTGGTCAGCCGACGGTTGCTCAATGGGCAGCAGTGGCAGGGGTAGATCGGAAGACACTTAGGAAACGATTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATCCGACTTGTCATATCAATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCAGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGACGGTACCAAGGGTTTTAAATTCTCCACCTATGCTCACTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAACTGTATAGTGAAAATGGAAGACAGCCCGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTATGACCCCAAAAGCTCCCAGATCTCTGGAACAAAAGATTGGGATCAACCAGAATCTTAAACCCTCGGAAGTAATTTCTGATCCTGATGCCGAAACAGCTGAAGAACAGCTCCTTAAGGAGTTTATGAAGAAGGACCTGGAAGAGGCGCTGGACAGTCTCAATCCAAGAGAGAGGCAGGTAGTAAGATGGAGATTTGGTATGGATGATGGAAGGACGAAGACCCTGCAAGAGATAGGGGAGACGATGGGTGTGAGTAGGGAGAGAATTAGGCAAATCGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGGTTTCATAA 1590 0.4415 MSCLLPHFNCHLDTFRTHPYALPTHLYAPSDPNTSWPYIAAQSQTNFKSTLSAESLLTNEEAVIAAAAAEALALAKAAVKVAKDAALLVKKKPPAEAEYKSQVSSKSDDLLLKWFQQMEAEDGLAGESMGAGAEIMEGVDVSPSEEESDVVEPSDEELERLQEQLSNSIAVRSRRQTERKAKRDRAAEKATTNFASFKPGYSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLVERFGGQPTVAQWAAVAGVDRKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKEFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGETMGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0020 529 Pfam Sigma-70 region 2 295 364 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 29 528 - -
Aed9g0020 529 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 363 414 IPR013324 -
Aed9g0020 529 Gene3D - 449 529 IPR036388 -
Aed9g0020 529 PRINTS Major sigma-70 factor signature 319 332 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PRINTS Major sigma-70 factor signature 343 351 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PRINTS Major sigma-70 factor signature 488 503 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PRINTS Major sigma-70 factor signature 467 479 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PRINTS Major sigma-70 factor signature 503 514 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 CDD Sigma70_r4 457 515 - -
Aed9g0020 529 Pfam Sigma-70 region 3 374 450 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 Pfam Sigma-70, region 4 463 515 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PIRSF Sigma_factor_SigC 6 529 IPR016262 -
Aed9g0020 529 Gene3D RNA Polymerase Primary Sigma Factor 133 367 - -
Aed9g0020 529 Gene3D - 368 445 IPR036388 -
Aed9g0020 529 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 293 517 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 ProSitePatterns Sigma-70 factors family signature 2. 488 514 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed9g0020 529 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 29 528 - -
Aed9g0020 529 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 427 526 IPR013324 -
Aed9g0020 529 MobiDBLite consensus disorder prediction 170 189 - -
Aed9g0020 529 MobiDBLite consensus disorder prediction 173 189 - -
Aed9g0020 529 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 216 365 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0020 Aed-Chr9 137466 142423 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0020 - - gmx:100788815 870.537