Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0015 ATGAGCATGGAGGGGTTGGCGCTTCCAGTTGCGCAATCACAACTGTTGCCGTTTCCAAAGCCAAAACTGTCCTACGCCATTCCCACAGCCACACCTTATAGATTTGTCTCTCTCACACGACACCGTGGACGCGGGTTTCGTTTTCGCACTTGGCTATGTTCGAAGGCACGGGCACAGGCACAAGGCGTTCCTCTTCCCGAACAAGACACGGAGAATAGTGTGAGTGGCGATTCCATACGGCAGATATTTCTTAATTTCTATGCTTCCCGTGGTCACAAGGTTCTTCCCAGTGCTTCTCTGGTCCCAGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTTCAATTCAAGCCTATCTTCCTAGGCAAGGTTCCAAGACAAGTACCTTGCGCTGTTACTGCACAAAGGTGCATCCGTACTAATGATATCCACAATGTTGGCCTAACTGCCAGACATCAGACATTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCATGGGAGCTTTCCACCGCACAGTTTGGTTTGCCACCAGATAGATTGTGGATTAGTGTTTATGAAGATGACGACGAGGCTTTTCAGCTCTGGTCTGACCAGGTCGGTGTCCCAGTTGAGCGAATAAAGAGGTTGGGAGAAGAGGACAACTTCTGGACCAGTGGAGTGACTGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGTAGATGCCGATCTCAGTGATGATACAAGGTTTATAGAGTTCTACAACTTAGTATTCATGCAGTACAACAAAAAAGATGACGGTTCTCTTGAACCTCTAAAGCAGAAGAACATTGATACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTTCAAAAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATTATAGAGAAGGCCTCTAAACTAGCAAATGTTTCATATGGTTTTGCCGATGATCAGACAAAGTGGAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTTATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGTGACCTTGAAGGAGCATTTTTACCAATTATTGCTGAGAAGGTAGTGGAATTAAGTACATGCATTGATGCTGATGTGAAGAACAAGGCACCTCGTATCTTTGAGGAGTTGAAGAGAGAAGAGCTTCGATTTGTGCAGACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTTCTGATGCTTTATCAAGTGCAGAAAGAAATGGAACTGTACCTTGCTTGGCTGGTGAAGATGTGTTTCTTTTGTATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAATGTGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGTGCACAATATTGTCAAACTTGCCATTGAAAATGGAGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGCCTTCGTTGTAAAGCAATGATAGAAAGCCTAATGGTAAATGGAAATCTAGCTGCACAAGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAACAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGAGAATCTACCAAAAGCTGTTGTGGAGATATTAGATGTTCAGAAATCTTTTGGCAAAATAATTGTTCACAAGGGTACAGTCCAAAAGGGTGTTGTACAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATGTGAACCTGAGGCAGCGAGCTAAGGTTCATCACACTGCTACTCATTTACTACAAGCTGCACTTAAAAAGGTTATTGGTCAGGAGACCTCACAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCGTGACAGTGAGCTTGCTGAAATTGAAGTGCTAATCAACCGATGGATTGAGGATGCAACACTACTTCAAACCAAAGTGATGCCTCTTGCTGATGCAAAAAGTGCTGGGGCTATAGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTTAGTAATACTTCTGAAATTCGTGGTTTTAAAATTATCTCAGAACAGGGTATTGCATCTGGAATCAGACGTATTGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATATCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTGCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCGAGAAATGAAAATTCTGATGTGCGTGCAAAAGCAGCAATCTACAAAGCTTCAGTCATTGCAAGCAAAGCATTGTTGGTGGGGAATTCAAAACAGTACAGGGTACTAGTTGAGTGCTTTGATGATGTTGATGCTGAGTCCCTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGGTACTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTGGTTGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAAATAGCAAAATTATGTGGTGGTGGAGGAGGTGGAAGGCCAAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTTGATAAGGCTCGGTCAGAGCTTATAGCTACTCTATGTGAAAAAGGGAATTGA 2922 0.4329 MSMEGLALPVAQSQLLPFPKPKLSYAIPTATPYRFVSLTRHRGRGFRFRTWLCSKARAQAQGVPLPEQDTENSVSGDSIRQIFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAVTAQRCIRTNDIHNVGLTARHQTFFEMLGNFSFGDYFKKQAILWAWELSTAQFGLPPDRLWISVYEDDDEAFQLWSDQVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLSDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGFADDQTKWNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTCIDADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLSDALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEECGVSIDMDGFDIEMEKQRRQSQAVHNIVKLAIENGENIAENVPDTEFIGYDSLRCKAMIESLMVNGNLAAQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENLPKAVVEILDVQKSFGKIIVHKGTVQKGVVQVGKEVEAAVDVNLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIEVLINRWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCCTLKVKPEEVTTRIENLLEELRVARNENSDVRAKAAIYKASVIASKALLVGNSKQYRVLVECFDDVDAESLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALDKARSELIATLCEKGN 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0015 973 Gene3D - 856 964 - -
Aed9g0015 973 Gene3D - 558 639 - -
Aed9g0015 973 SUPERFAMILY Translation proteins 534 639 IPR009000 -
Aed9g0015 973 Gene3D - 650 785 - -
Aed9g0015 973 Gene3D - 787 848 - -
Aed9g0015 973 Gene3D - 711 764 - -
Aed9g0015 973 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 75 963 - -
Aed9g0015 973 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 311 519 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Aed9g0015 973 Gene3D Bira Bifunctional Protein; Domain 2 74 307 IPR045864 -
Aed9g0015 973 SUPERFAMILY Class II aaRS and biotin synthetases 76 310 IPR045864 -
Aed9g0015 973 SMART tRNA_SAD_4 740 783 IPR012947 GO:0004812|GO:0005524|GO:0043039
Aed9g0015 973 Pfam DHHA1 domain 820 962 IPR003156 GO:0003676
Aed9g0015 973 PANTHER ALANYL-TRNA SYNTHETASE 75 963 - -
Aed9g0015 973 Coils Coil 819 839 - -
Aed9g0015 973 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 74 796 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Aed9g0015 973 PRINTS Alanyl-tRNA synthetase signature 264 275 IPR002318 GO:0000166|GO:0005737
Aed9g0015 973 PRINTS Alanyl-tRNA synthetase signature 342 358 IPR002318 GO:0000166|GO:0005737
Aed9g0015 973 PRINTS Alanyl-tRNA synthetase signature 142 153 IPR002318 GO:0000166|GO:0005737
Aed9g0015 973 PRINTS Alanyl-tRNA synthetase signature 291 304 IPR002318 GO:0000166|GO:0005737
Aed9g0015 973 PRINTS Alanyl-tRNA synthetase signature 366 379 IPR002318 GO:0000166|GO:0005737
Aed9g0015 973 Pfam tRNA synthetases class II (A) 79 641 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Aed9g0015 973 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 740 783 IPR012947 GO:0004812|GO:0005524|GO:0043039
Aed9g0015 973 SUPERFAMILY ThrRS/AlaRS common domain 639 798 IPR018163 GO:0000166
Aed9g0015 973 CDD AlaRS_core 77 306 - -
Aed9g0015 973 Hamap Alanine--tRNA ligase [alaS]. 75 968 IPR023033 GO:0004813
Aed9g0015 973 TIGRFAM alaS: alanine--tRNA ligase 79 947 IPR002318 GO:0000166|GO:0005737
Aed9g0015 973 Hamap Probable alanine--tRNA ligase, chloroplastic. 66 970 IPR027522 GO:0009507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0015 Aed-Chr9 99379 105280 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0015 K01872 - gmx:100817906 1734.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0015 9 99379 105280 Aed9g0015 9 99379 105280 ECH