Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0012 ATGAAGGTAGTGTTATGGTGCATGGTGACGTTATTAGTGTCAGTGATAGGAAGGTGCTACGGGGAACAATGTGGAAGACAAGCAGGAGGTGCTCTGTGCCCAGGGGGCCTTTGTTGCAGCGAATTTGGGTGGTGCGGCTCAAGCAGCGACTATTGCGGCCAAGGTTGCCAAAGCCAGTGTGGTCCCACTCCCGGTCCTAGCGATCTTAGCAGCATCATCTCTAGGAGCAGCTTCGACCAGATGCTCAAACATCGCAACGACGGAGCCTGTCCTGGCAAAGGCTTTTACACCTACGACGCTTTCATCGCAGCTGCCAAGGCTTTCCCCAGCTTCGGCAACACCGGAGACACCACCACTCGCAAGAGGGAGATTGCCGCTTTCTTAGGACAAACTTCTCACGAAACAACAGGTGGGTGGCCAACTGCACCTGATGGACCATACGCTTGGGGATACTGCTTTCTAAGGGAACAAAACCCAACCGCCTCATACTGTTCCCCAAGCGCCCAATTTCCATGTGCTTCGGGCAAGCAATACTATGGTCGTGGTCCCATCCAAATCTCATGGAACTACAACTACGGACAGTGTGGAAAAGCTATAGGAGTGGACTTGCTCAACAACCCAGACCTGGTCGCCACTGACCCTCTCATCTCCTTCAAGTCTGCTATCTGGTTCTGGATGACGCCACAGTCACCCAAGCCATCTTGCCACGACGTCATCACCGGACGATGGACCCCATCCGCTTCTGATCAGTCCGCCGCTCGCCTTCCCGGCTACGGCACTGTCACCAACATCATCAACGGCGGCCTTGAATGTGGCAGAGGCCAGGATTCCAGGGTTCAGGACCGCATCGGTTTTTACAAGAGATACTGCGACTTGCTTGCTGTTTCCTATGGCAATAATCTCGACTGTTTCTCTCAGAGACCATTTGCCAATTCACTGCTCCTCCAGGCCATCATCTAA 960 0.5365 MKVVLWCMVTLLVSVIGRCYGEQCGRQAGGALCPGGLCCSEFGWCGSSSDYCGQGCQSQCGPTPGPSDLSSIISRSSFDQMLKHRNDGACPGKGFYTYDAFIAAAKAFPSFGNTGDTTTRKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPTASYCSPSAQFPCASGKQYYGRGPIQISWNYNYGQCGKAIGVDLLNNPDLVATDPLISFKSAIWFWMTPQSPKPSCHDVITGRWTPSASDQSAARLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDLLAVSYGNNLDCFSQRPFANSLLLQAII 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0012 319 SUPERFAMILY Lysozyme-like 68 309 IPR023346 -
Aed9g0012 319 Pfam Chitinase class I 72 303 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aed9g0012 319 Gene3D - 72 303 - -
Aed9g0012 319 ProSiteProfiles Chitin-binding type-1 domain profile. 21 62 IPR001002 GO:0008061
Aed9g0012 319 ProSitePatterns Chitinases family 19 signature 1. 90 112 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aed9g0012 319 CDD ChtBD1_GH19_hevein 22 61 - -
Aed9g0012 319 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Aed9g0012 319 PANTHER CHITINASE (CLASS IB) / HEVEIN 5 310 - -
Aed9g0012 319 SMART ChitinBD_3 23 60 IPR001002 GO:0008061
Aed9g0012 319 Pfam Chitin recognition protein 23 60 IPR001002 GO:0008061
Aed9g0012 319 PRINTS Chitin-binding domain signature 31 39 IPR001002 GO:0008061
Aed9g0012 319 PRINTS Chitin-binding domain signature 46 53 IPR001002 GO:0008061
Aed9g0012 319 PRINTS Chitin-binding domain signature 39 46 IPR001002 GO:0008061
Aed9g0012 319 PANTHER CHITINASE-RELATED 5 310 - -
Aed9g0012 319 SUPERFAMILY Plant lectins/antimicrobial peptides 23 65 IPR036861 GO:0008061
Aed9g0012 319 Gene3D - 21 62 IPR036861 GO:0008061
Aed9g0012 319 ProSitePatterns Chitinases family 19 signature 2. 216 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aed9g0012 319 CDD chitinase_GH19 73 303 - -
Aed9g0012 319 ProSitePatterns Chitin recognition or binding domain signature. 33 52 IPR018371 GO:0008061
Aed9g0012 319 Gene3D Endochitinase, domain 2 155 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0012 Aed-Chr9 97928 98887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0012 22 318 Glycoside Hydrolase AT3G12500 72.848 3.26e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0012 K20547 - rcu:8282410 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0012 9 97928 98887 Aed9g0012 9 97928 98887 ECH