LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g1595	ATGTTCACCACCACCATTTTAAATCGAAACTCGAGAATGGGAGACAAAGATGTCAAGGAAGAACAAAAGGGTGGATTCAGGGCTTCCATGTTTATTTTTGTGTTATCAGCATTGGACAACATGGGTTTTGTGGCAAACATGGTGAGCTTGGTCCTATACTTTTATGGGGCTTTGGTAATGCTCACGGTTCAAGCTGCTCTGGAGCATTTACACCCAGATTTTTGTGGCAAGCCAAGCTGTGTCAAAGGTGGCATAGCTGTCATGTTTTACTCATCATTGTACTTGTTGGCTTTGGGCATGGGAGGAGTAAGGGGCTCCTTGACTGCATTTGGTGCTGACCAATTTGATGAAAAGAATCCAAGAGATGCTAAGGCTCTTGCAAGCTTCTTCAATTGGCTTTTGCTCAGTTCAACATTGGGTTCAATTATAGGGGTCACTGGGGTTGTGTGGGTTAGCACCCAAAAGGCTTGGCACTGGGGCTTTATCATAATCACTGTTGCACTGCCAGAGTCTGATGAAGAGCTTTATGAGGTGTATGAAGATTCTGCTACATTAGAGAAGATTGCACACACCAACCAAATGAGGTTTCTAGATAGAGCAAGCATTCTTCAAGAAAACATTGAGCCACAGCCATGGAAAGTGTGCACAGTGACACAAGTTGAAGAAGTGAAGATCCTAACCAGAATGTTACCTATATTAGCTAGCACCATTATAATGAACACTTGTTTAGCACAGCTTCAAACATTCTCAGTTCAGCAGGGAAATGTGATGAACCTGAAACTTGGTTCTTTCACAGTGCCTGCACCATCCATTCCAGTTATCCCCCTTCTTTTCATGTCCATCCTGATTCCCCTCTATGAATTCTTCTTTGTTCCATTTGCAAGAAAGATCACTCACCACCCTTCTGGGGTTACACAACTACAAAGAGTAGGTGTGGGGTTAGTACTTTCATCAATTTCAATGACAATAGCTGGGATAGTAGAAGTAAAAAGAAGAGACCAAGGAAGGAAGGACCCTTCAAGGCCAATTAGTCTTTTTTGGCTATCTTTCCAATATGCTATATTTGGAATTGCAGACATGTTCACTCTTGTAGGACTCCTAGAATTCTTCTACAGAGAAGCACCTGAAACCATGAAGTCACTGTCAACTTCTTTCACATATTTGTCCATGTCTCTTGGTTACTTCTTGAGCACAATCTTTGTGGAAGTCATTAATGCTGTTACCAAAAGGGTCACTCCAAGCAAACAAGGATGGTTGCATGGCTTGGACTTAAACCAAAACAATCTCAACTTGTTCTATTGGTTCTTAGCAATCCTTAGCTTCCTTAATTTTTTTAACTTCCTTTATTGGGCCTCTTGGTACAAGTACAAAGCTGAAGACAACAACAATTCAAGGGTGAATTTGATGAAGGCTCCTCCTCTCACTCTCAAAACGGTTGGTGAGAGAAAACAAGATGAGGAAGAGAAGAAGGATATGATGATGAGAGTTAAGGCTAAAGAAAGTAGCCAAACAAGTGAAGCCAACACTGAGGGACCCTCTTCCTCTGATGAAACAGATGATGGAAGGAACTCTAGGGAATGGAAGCAGAGATAA	1593	0.4187	MFTTTILNRNSRMGDKDVKEEQKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGALVMLTVQAALEHLHPDFCGKPSCVKGGIAVMFYSSLYLLALGMGGVRGSLTAFGADQFDEKNPRDAKALASFFNWLLLSSTLGSIIGVTGVVWVSTQKAWHWGFIIITVALPESDEELYEVYEDSATLEKIAHTNQMRFLDRASILQENIEPQPWKVCTVTQVEEVKILTRMLPILASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPAPSIPVIPLLFMSILIPLYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSSISMTIAGIVEVKRRDQGRKDPSRPISLFWLSFQYAIFGIADMFTLVGLLEFFYREAPETMKSLSTSFTYLSMSLGYFLSTIFVEVINAVTKRVTPSKQGWLHGLDLNQNNLNLFYWFLAILSFLNFFNFLYWASWYKYKAEDNNNSRVNLMKAPPLTLKTVGERKQDEEEKKDMMMRVKAKESSQTSEANTEGPSSSDETDDGRNSREWKQR	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g1595	530	MobiDBLite	consensus disorder prediction	479	497	-	-
	Aed8g1595	530	SUPERFAMILY	MFS general substrate transporter	86	459	IPR036259	-
	Aed8g1595	530	MobiDBLite	consensus disorder prediction	498	514	-	-
	Aed8g1595	530	Pfam	POT family	181	418	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aed8g1595	530	Pfam	POT family	47	167	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aed8g1595	530	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	57	167	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aed8g1595	530	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	19	57	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aed8g1595	530	PANTHER	PEPTIDE/NITRATE TRANSPORTER	167	468	-	-
	Aed8g1595	530	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	167	468	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aed8g1595	530	PANTHER	PEPTIDE/NITRATE TRANSPORTER	57	167	-	-
	Aed8g1595	530	PANTHER	PEPTIDE/NITRATE TRANSPORTER	19	57	-	-
	Aed8g1595	530	Gene3D	MFS general substrate transporter like domains	55	168	IPR036259	-
	Aed8g1595	530	Gene3D	MFS general substrate transporter like domains	182	463	IPR036259	-
	Aed8g1595	530	MobiDBLite	consensus disorder prediction	477	530	-	-
	Aed8g1595	530	MobiDBLite	consensus disorder prediction	515	530	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g1595	Aed-Chr8	21106736	21110503	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g1595	43	456	Organic Solute Cotransporters	AT1G27040	38.544	1.68e-111	340

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g1595	K14638		-	gmx:100817702	904.82

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed8g1595	8	21106736	21110503	Aed8g1595	8	21106736	21110503	ECH
	Aed2g2361	2	26846699	26850675	Aed8g1595	8	21106736	21110503	PCT