Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0954 ATGAAGTGCCTACGCTCCGGGGAGTCATTGGGAGGAGCTGATGAAGTGCTGTTTCCTTCATCATCTGGATCTCTTGCAAGTGCAATCAAGGACTTTTCAGCTAGTGATACTTCTTACCTGGCTGAACAGATTGATAAGAAGCCAGACACTGGCAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGTGTCTTGAACTACGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAAAAGCAGAGAACGCCGCAAAAGACATTCTCAAAATCATGCAGAACCGCAAATGTCTATACATTCTGTTGGCTTACTATTGGAAGCTCTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTCGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTCTGGATGTAGTGGAGTCTTCATTGCCTGAAGGCATGCCTGATAACTTTAGTGCTGAATGTAAATTGCAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTCTCCACGTGAAGTTATTTTGTCTTACCGACGAGCACTCCTTCATCAATGGAATCTTGATGCGAAGACTATAGCAAAGATTCAGAAAGAATTTGTTGTATTTCTTCTTTATAGTGGAGGAGAAGCAACACCTCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCAAGAAACAACATAGAAGAGGCTATACTTCTCTTAATGATTTTGTTAAGAAAAGTCTCTCTAAATAGAATTGAGTGGGATCCTTCAATTCTAGACCACCTTTCATTTGCTCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCACTCAATTGGAAGAATTGCTTCCTGGGACTATCCATCGAAGTGAAAGGTACTATGATCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTCAGAAAGTTGTTGAGGAGTAGAGAGGACCAACACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTACTCTTGCAGCAGAAGGTGTAAGCTTTGCTCAGCGAGCACTTCAGAACTTGGATGGTAGATGCAATCAGCTAGAAAGTCATGCCAACTTCTTTTTTGGTGTTTCACTTTCAGCACAGTCGAAATTGGCTGCTTCTGATTCTGAGAGGCTTAAGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGGCAGAATGAGAAACCCCCATATACTATACCATCTCAGTTTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTGCTTTTTAAAACTTGAAGGTGGGGCTAATGTTAAAGGATGGTTATTGTTAGCCCGTATATTGTCTGCTCAAAAACAGTTTTTGGATGCTGAATCTGTTATTAATGCTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAAGGCCAGTTAAGGAATGCCATAGAAACATATACTCAGTTGCTTGCTGTTCTTCAAGTTCAGAGTAAAGGTTTTGGTTCTGGGAAGAAGCTATATAAGGACAATAGAGATCGGGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTGCTTATGTATATATCAGTCTTTTGCAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCATTCTCTGCATCTAGATTTCATGCAACAGGCATGATGTACGAAGCAAAGGGCCATTACAAAGAGGCTCTAAAAGCTTTTGGAGATGCCTTGGACATTGATCCTGGCCATGTCCTTAGCTTAATCTCCACTGCTGTAGTTCTTAAACGATGCAGTAACAAATCAAATCCAGCGGTTAAAAGCTTTCTGATGGACGTGCTACGGCACGACAGATTCAGTGCTTCAGCATGGTATAATCTTGGCCTTCTTCACAAGTCTGAGGGCACAGCAGCATCATTAGTTGAAGCTGCTGAGTGTTTTCAAGCAGCACACTTTCTTGAAGAGTCTGCACCTGTTGAACCTTTCAGATGA 2142 0.416 MKCLRSGESLGGADEVLFPSSSGSLASAIKDFSASDTSYLAEQIDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSKSRERRKRHSQNHAEPQMSIHSVGLLLEALFLKAKSLQVLERFKEAAQSCKVILDVVESSLPEGMPDNFSAECKLQETLNKAVELLPELWKLADSPREVILSYRRALLHQWNLDAKTIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTALATQLEELLPGTIHRSERYYDLALCYYGAGKDLVALDLLRKLLRSREDQHHVPGLLMASKICCENSTLAAEGVSFAQRALQNLDGRCNQLESHANFFFGVSLSAQSKLAASDSERLKRQSEALHALETAGRMRNPHILYHLSLEYAEQRKLDAALYYAKCFLKLEGGANVKGWLLLARILSAQKQFLDAESVINAALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQVQSKGFGSGKKLYKDNRDRARNLEVEIWHDIAYVYISLLQWHDAEVCLSKSKAIKPFSASRFHATGMMYEAKGHYKEALKAFGDALDIDPGHVLSLISTAVVLKRCSNKSNPAVKSFLMDVLRHDRFSASAWYNLGLLHKSEGTAASLVEAAECFQAAHFLEESAPVEPFR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0954 713 SUPERFAMILY TPR-like 137 354 IPR011990 GO:0005515
Aed8g0954 713 SUPERFAMILY TPR-like 322 539 IPR011990 GO:0005515
Aed8g0954 713 Gene3D Tetratricopeptide repeat domain 28 357 IPR011990 GO:0005515
Aed8g0954 713 Gene3D Tetratricopeptide repeat domain 410 544 IPR011990 GO:0005515
Aed8g0954 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Aed8g0954 713 SMART tpr_5 321 354 IPR019734 GO:0005515
Aed8g0954 713 SMART tpr_5 136 169 IPR019734 GO:0005515
Aed8g0954 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Aed8g0954 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Aed8g0954 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Aed8g0954 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Aed8g0954 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Aed8g0954 713 PANTHER PROTEIN NPGR2 1 713 - -
Aed8g0954 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Aed8g0954 713 SUPERFAMILY TPR-like 512 683 IPR011990 GO:0005515
Aed8g0954 713 ProSiteProfiles TPR repeat region circular profile. 601 632 - -
Aed8g0954 713 Pfam Tetratricopeptide repeat 608 633 IPR019734 GO:0005515
Aed8g0954 713 Gene3D Tetratricopeptide repeat domain 550 708 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0954 Aed-Chr8 8312921 8319663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0954 1 713 Calmodulin-binding Proteins AT4G28600 58.345 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0954 K21843 - gmx:100800762 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0954 8 8312921 8319663 Aed8g0954 8 8312921 8319663 ECH
Aed4g0146 4 1065774 1074683 Aed8g0954 8 8312921 8319663 PCT