Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0146 ATGGGGAATAGGGCTAGGCAGGGGAGGAGATTGCAGAAAATGATGAAGTGCATGTGCCTGAGGGAGCCGTTGAAAGGAGGAGAAGAAGACGAAACGGTTCCTTCTTCGGATTCTCTTGCAATTCGAGAACTTTATTCTTCAACGGCAAGTGGGCGTTCTGGCCTAGATGGAGAAATTCAGATGATGGGGTCTCATTCTGGTGACATTGATGAAGCTGAATTGGCCTTGCGTGAGACTGGCATCTTGGATAATGAGGAAGCTAAAGCTTTGTTAGGAAAAGATGAATATCAGAAAGGGAATATAGAAGCTGCTTTAGGTGTTTATGAGAGAATAAATATAAGCACTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCATAAGAAACATTCCCATTATTATGCTAATCCCCCAATGTCCATATACACAGCTGGATTGCTGTTGGAAGCAATTTTCCTGAAAGCAAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACATAGTTGAGTCTTCATTACCTGAAGGCTTGCCTCAAAACTTTGGTGATGAGGGTAAATTGCAGGAGACTTTGAGAAAGGTAGTTGAGCTACTTCCAGAATTGTGGAAAGTTGCAGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTTCACCAATGGAATCTTGACGCAAAAGCCATTGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGCAATCCCCTCAAATCTTCGTTCGCATATGGACAGCTCATTTGTACCCAGAAACAACTTAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAATATATCTAAATAAAATTGAGTGGGATCCATCAATTTTGGACCACCTTTCATTTGCTCTATCCGTTTCAGGGGATTTGACAACTTTAGCCAATCAATGGGAGGAATTACTCCCTGGGACTATCAATCGAAGAGAAAGGTACCATGCCTTATCTCTTTGTTATTATGGCGCAGGTGATGACTTGGTAGCGCTGAATCTTCTTAGGAAAGTATTGAGTAGTACAGAGGACCCAAATCATGTTCCTTCTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAAGCCTGATCTTGCAAAAGATGGGGCAAGCTTTGCTCACAAAGTTCTTGAGAACTTGGATGGAAGATGTGATCAATTGGAAAGTCTTTCCCGTTGCTTACTTGGTGTTTCACTTTCATCACACTCAAAAATTACTATTTCTAATTCTGAGAGGGTTGAGAAACAATCTGAGGCACTTCATTCTCTGGAAACTGCAAGCAAAGTGACCAGAGTGAGTAACCCCCTTGTAATATACTATTTGAGTTTAGAGTGTGCAGAGCAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTTTCTAAACTTGGAAGCTGGGTCTAATGTTAAAGGGTGGTTGTTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTCAATGAAGCTTTGAGTCAGACTGGAATATGGGATCAAGGAGAGTTACTAAGAACAAAAGCTAAACTACAAATTGCACAGGGCCAGTTGAAGAGTGCCATTGAAACATATACTCAGCTTCTTGCAATTCTCCTAGTTCAGAGAAAAACTTTTGGTTCAAGGAAGAAACTGTACAAGGACTACATGGATCTTGCTAGGAATATGGAAGTGGAAATATGGCATGATCTTACTTATGTGTACATAAGTCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACTATACTCTGCCTCTAGATGTCATGCAATAGGGACAATGTACGAATCAAAGGGCCTTTATAAAGAGGCTTTAAAAACTTTTCATGATTCTTTGAGCATTGATCCCGGACATGTTCCTAGCTTGATCTCTACTGCTGTGGTTCTTAGACAGTGCAATAAGAAGAGCTCAAAAGCTTCTCTTTTTCGTGATTGGAGAGAGATGGAGAGTGCTAATGGGAAGAGAGCACATGAAGAAGCAGGGCCTTCTTCTGCTTCTAAGATTGATGGGAGCAAACAAGAAATGACTGAAAAAGCGACTTTTGATGAGGAGGAGGATGAAGGAGGCGTTGAAGATAGTAAAAATGGTTTCTTTGTTCCTGGACCTCTTCTTTCTCTCAAGGAACAGATCGAACGGGACAAGGAGGACGAAAGTCTAAGGAGGTGGAAGGAGAAGCTTTTGGGTTGCTTGGAAAGTGATTTAGATGGTCAATTGGATCCTGAAGTGAAATTCCACTCTATAGGAATTCTCTCTGAGGATTTTGGTGAAATTGTTACTCCTTTACCTGTGGATGAAAATCGGAACGGTTGTACTCTATTCACTCTCCGGGAGGGGTCTCGCTATCAGCTTAAGCTAAAATTTAGTGTTCTTCACAACATTGTGTCTGGCTTGACATACTCCAACACTGTGTGGAAAGGAGGACTTCAAGTTGATCAGAGCAAAGGAATGTTGGGTACTTTTGCTCCTCAAAAGGAACCATATGTATATGCCTTGAAGGAGGACACCACTCCCTCTGGTGCACTTGCAAGGGGTGTTTACTCAGCCAAACTGAAGTTTGAAGATGATGACAGAAGGTGTCATATGGAACTTAAATATTTCTTCGAGATAAAAAAGAGCAGCTAG 2727 0.4129 MGNRARQGRRLQKMMKCMCLREPLKGGEEDETVPSSDSLAIRELYSSTASGRSGLDGEIQMMGSHSGDIDEAELALRETGILDNEEAKALLGKDEYQKGNIEAALGVYERINISTVTSKMKISLAKSRERHKKHSHYYANPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDIVESSLPEGLPQNFGDEGKLQETLRKVVELLPELWKVADSPRDVILSYRRALLHQWNLDAKAIAKIQKEFVVFLLYSGGEAIPSNLRSHMDSSFVPRNNLEEAILLLMILLRKIYLNKIEWDPSILDHLSFALSVSGDLTTLANQWEELLPGTINRRERYHALSLCYYGAGDDLVALNLLRKVLSSTEDPNHVPSLLMASKICCEKPDLAKDGASFAHKVLENLDGRCDQLESLSRCLLGVSLSSHSKITISNSERVEKQSEALHSLETASKVTRVSNPLVIYYLSLECAEQRKLDAALHYAKCFLNLEAGSNVKGWLLLARILSAQKQFLDAESIVNEALSQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLVQRKTFGSRKKLYKDYMDLARNMEVEIWHDLTYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYESKGLYKEALKTFHDSLSIDPGHVPSLISTAVVLRQCNKKSSKASLFRDWREMESANGKRAHEEAGPSSASKIDGSKQEMTEKATFDEEEDEGGVEDSKNGFFVPGPLLSLKEQIERDKEDESLRRWKEKLLGCLESDLDGQLDPEVKFHSIGILSEDFGEIVTPLPVDENRNGCTLFTLREGSRYQLKLKFSVLHNIVSGLTYSNTVWKGGLQVDQSKGMLGTFAPQKEPYVYALKEDTTPSGALARGVYSAKLKFEDDDRRCHMELKYFFEIKKSS 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0146 908 SUPERFAMILY TPR-like 337 559 IPR011990 GO:0005515
Aed4g0146 908 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Aed4g0146 908 PANTHER PROTEIN NPG1 7 674 IPR043376 -
Aed4g0146 908 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 674 - -
Aed4g0146 908 SUPERFAMILY E set domains 720 907 IPR014756 -
Aed4g0146 908 SMART tpr_5 152 185 IPR019734 GO:0005515
Aed4g0146 908 SMART tpr_5 620 653 IPR019734 GO:0005515
Aed4g0146 908 SMART tpr_5 586 619 IPR019734 GO:0005515
Aed4g0146 908 SMART tpr_5 494 527 IPR019734 GO:0005515
Aed4g0146 908 SMART tpr_5 530 563 IPR019734 GO:0005515
Aed4g0146 908 Gene3D Tetratricopeptide repeat domain 57 683 IPR011990 GO:0005515
Aed4g0146 908 SUPERFAMILY TPR-like 528 669 IPR011990 GO:0005515
Aed4g0146 908 Pfam RHO protein GDP dissociation inhibitor 726 906 IPR000406 GO:0005094|GO:0005737
Aed4g0146 908 Pfam Tetratricopeptide repeat 621 652 IPR019734 GO:0005515
Aed4g0146 908 MobiDBLite consensus disorder prediction 686 728 - -
Aed4g0146 908 Gene3D Coagulation Factor XIII, subunit A, domain 1 733 908 IPR024792 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0146 Aed-Chr4 1065774 1074683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0146 15 674 Calmodulin-binding Proteins AT4G28600 53.433 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0146 K21843 - gmx:100784353 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0146 4 1065774 1074683 Aed4g0146 4 1065774 1074683 ECH
Aed4g0146 4 1065774 1074683 Aed8g0954 8 8312921 8319663 PCT