Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0461 ATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCCTTCAAGATCTTGTTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTGCTTGTTAGCTTCATCTCCAACTCTGTTGAAGATCTTGCCCCCACAATTGGTGTTGATTTTAAGATCAAGATTTTCACAGTAGGTGGGAAGAGATTGAAACTAACTATCTGGGACACTGCTGGGCAAGAAAGGTTCAGAACACTAACTAATTCTTACTATAGAGGAGCGCAAGGAATCATTCTTGTTTATGATGTAACAAGAAGAGACACCTTCACAAACATATCAGAAGTGTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGAATCTGAGAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGGAGAGGTGCTTCGAGGAACTTGCTCTAAAGATAATGGAAGTTCCAAGTCTTTTGGAAGAAGGATCTACAGTAGTAAAAAGGAATATTCTAAGGCAACAACAACAGGAACCACAAGCATCCCAAGTTGGTGGTTGTTGCTCTTAA 639 0.4085 MSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSVEDLAPTIGVDFKIKIFTVGGKRLKLTIWDTAGQERFRTLTNSYYRGAQGIILVYDVTRRDTFTNISEVWSKEVELYSTNQNCVKMLVGNKVDRESERVVSKEEGLALAEELGCLFFECSAKTRENVERCFEELALKIMEVPSLLEEGSTVVKRNILRQQQQEPQASQVGGCCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0461 212 ProSiteProfiles small GTPase Rab1 family profile. 10 212 - -
Aed8g0461 212 ProSiteProfiles small GTPase Ras family profile. 6 212 IPR001806 GO:0003924|GO:0005525
Aed8g0461 212 PRINTS Transforming protein P21 ras signature 119 132 - -
Aed8g0461 212 PRINTS Transforming protein P21 ras signature 55 77 - -
Aed8g0461 212 PRINTS Transforming protein P21 ras signature 15 36 - -
Aed8g0461 212 PRINTS Transforming protein P21 ras signature 37 53 - -
Aed8g0461 212 PRINTS Transforming protein P21 ras signature 154 176 - -
Aed8g0461 212 SMART ras_sub_4 12 179 - -
Aed8g0461 212 CDD Rab18 15 176 - -
Aed8g0461 212 SMART arf_sub_2 5 180 - -
Aed8g0461 212 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Aed8g0461 212 SMART ran_sub_2 20 212 - -
Aed8g0461 212 Gene3D - 8 211 IPR027417 -
Aed8g0461 212 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
Aed8g0461 212 PANTHER DRAB5-RELATED 1 212 - -
Aed8g0461 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 199 IPR027417 -
Aed8g0461 212 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
Aed8g0461 212 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Aed8g0461 212 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 212 - -
Aed8g0461 212 SMART rab_sub_5 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0461 Aed-Chr8 3893426 3897038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0461 9 112 EF-hand Containing Proteins AT5G27540 30.476 4.44e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0461 K07910 - gmx:100807498 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0461 8 3893426 3897038 Aed8g0461 8 3893426 3897038 ECH
Aed2g1896 2 23582115 23585429 Aed8g0461 8 3893426 3897038 PCT