Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0413 ATGGCTATGATAACTCTCTTTGCTATTTTATTCTTTATGGCCCCCTCAAGCAATGCCTATTGGCCACCTTCATCTGGTTACAGGCCAAGTTCCAAATTCCGGCCTGTGAACTTCTATAGAGGGTTTAAAAACCTTTGGGGCCCTCAGCACCAAAGCATAGACCAAAATGCATTAACAATATGGCTTGATAGCTCCTCAGGAAGTGGCTTCAAGTCAAATCGACCATTTCGATCTGGCTACTTTGGTGCTTCCATTAAGCTCCACCAAGGCTATACTGCAGGAGTTATAACAGCTTTCTATCTTTCTAACAATGAGGCACATCCGGGCTTCCATGATGAAGTGGACATTGAGTTTCTTGGAACAACATTTGGAAAACCTTATACTTTGCAGACCAATGTTTACATAAGAGGGAGTGGAGATGGCACAATTATTGGCAGAGAAATGAAGTTCCACCTTTGGTTTGATCCTACCCAAAACTTTCATCACTATGCTATACTTTGGAGTCCTAAGGAAATAATATTCCTTGTGGATGATATTCCAATAAGGAGGTACCCAAGGAAGAGTGCTGAAACATTTCCACTGAGGCCAATGTGGCTTTATGGTTCAATATGGGATGCTTCGTCATGGGCAACAGAAGATGGAAAGTACAAGGCTGATTACAGATACCAACCTTTTGTTGCAAAGTACACCAACTTCAGAGCTGGTGGTTGCTCAGCCTATGCCTCTCGCCGGTGCCGCCCTGTCTCAGCCTCGCCGTATCGCTCCGGTGGCTTGACCAGACACCAATATTGGGCCATGAGATGGGTGCAAAAATACCACATGGTCTATAACTACTGCCAAGACCCCAAAAGAGACCACAGACTAACACCTGAGTGTTGGGGGTAA 885 0.4486 MAMITLFAILFFMAPSSNAYWPPSSGYRPSSKFRPVNFYRGFKNLWGPQHQSIDQNALTIWLDSSSGSGFKSNRPFRSGYFGASIKLHQGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGTIIGREMKFHLWFDPTQNFHHYAILWSPKEIIFLVDDIPIRRYPRKSAETFPLRPMWLYGSIWDASSWATEDGKYKADYRYQPFVAKYTNFRAGGCSAYASRRCRPVSASPYRSGGLTRHQYWAMRWVQKYHMVYNYCQDPKRDHRLTPECWG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0413 294 Pfam Glycosyl hydrolases family 16 40 221 IPR000757 GO:0004553|GO:0005975
Aed8g0413 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 293 IPR044791 GO:0004553
Aed8g0413 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5 293 - -
Aed8g0413 294 PIRSF EndGlu_transf 2 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed8g0413 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 14 229 IPR000757 GO:0004553|GO:0005975
Aed8g0413 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 280 IPR013320 -
Aed8g0413 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 292 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed8g0413 294 Gene3D - 18 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0413 Aed-Chr8 3417773 3420305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0413 1 292 Glycoside Hydrolase AT3G44990 64.164 4.75e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0413 K08235 - gmx:100813742 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0413 8 3417773 3420305 Aed8g0413 8 3417773 3420305 ECH
Aed2g1878 2 23478188 23480600 Aed8g0413 8 3417773 3420305 PCT