Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2214 ATGAATGCTTTGATATTTCAGCCCAATACAGCATCTTATTATCCACGTTTGGATGTACCACAAATCAGGACATGCAAAAGCATGCGAGAATTGAAGCAGGTGCATGCGTTTTTTGTCAAAACAGGACAAACCCATGACACTGCAATAGCAACAGAGATTCTCAAGCTCAGTGCCACCTCTGATTTTCGTGATATTGGATATGCCCTCTCGGTGTTCGACCAATTGCCTGAACGAAATTGCTTTGCTTGGAACACTGTCATAAGGGCACTTGCTGAAACCCAAGACAAGCACTTGGATGCCTTGTTGGTTTTCTGTCAAATGCTGTCTGAGGCAACGGTGGACCCTAACCAGTTCACTTTCCCGTCAGTGTTGAAGGCCTGCGCGGTCATGGCCAGGTTGGAAGAAGGGAAGCAGGTTCATGGGTTGCTTCTTAAATTTGGATTTGTGGATGATGAGTTTGTTGTCACTAATTTGTTAAGGATGTATGTGATGTGTGGGAATATGGAGGATGCTCATGGTTTGTTTCATAGGAATGTTGATGATGTAAGGAGGTTGGTGAGAGATGAGAGGAGGAGAGAGTTTAATGTGGTTCTATGCAATGTGATGGTTGATGGGTATGTAAGAGTTGGGAACCTTAAGGCTGCTAGGGAGTTATTTGACAGGATGGCTCAAAGGAGTGTGGTTTCTTGGAATGTGATGATTTCTGGGTATTCTCAAAATGGGTTATATAAGGAGGCCAAAGAGATGTTTCATACGATGATGCAAATGGGAGACGTGCTTCCAAACCGGGTGACTTTTGTCAGTGTGTTGCCTGCAATTTCACGTCTTGGAGCGCTTGAGTTGGGGAAATGGGTGCATTTGTACACACAGAAGAATAAGATTCAGATTGATGATGTGCTCGGCTCGGCTCTGGTTGACATGTATGCCAAGTGTGGGAGCATTGAGAAGGCAATTCAGGTCTTTGAGAGGCTGCCACAAAATAATGTTATAACATGGAATGCTGTTATTGGTGGTCTTGCCATGCATGAAGCAGAACAGCTTATATTGAACATGCCAATGAAACCAGATGATGTAATATGGAAGGCCCTGCTTGGTGCTTGTAAGGTGCATAAAAATATCGAAATTGGTAAGCGTGCTGCAGAGGTTTTAATGCAGTTGGCTCCCCATGATAGTGGGGCTTATGTGGCTCTCTCCAACATGTATGCCTCATCAGGGGATTGGGATGGAGTTGCAGAGGTGAGGCTAATGATGAAAGATATGGACATAAGGAAAGACCCTGGATGTAGTTGGATTGAAATTGAAGGTGTTATTCATGAGTTCCTTGTCGAAGATGATTCCCATCCTAGAGCCAAAGACATACACTCAATGTTGAGGGAAATTTCAAACAAGTTGAGCTTGGAAGGTCATATGCCAGACACCACACAAGTGTTGCTCAAGATGGATGAGAAACATAAAGAAAGTGTGCTGCACTACCACAGTGAGAAGATTGCTGTTGCTTTTGGCTTAATTAATACAATACAAGAACATAAATGGGAATCTTTAATAGTGGGTATTCATATGTCTACACTAGACGAGAAGGAGGAGTATAACACAGAAACCAAATTAAAGAGAAAGATATTGTACAATGGTGAGCTTTCACTTCACTCTCAGTTCAGTTCAACCCTTGGTTCTGATAATGGTAATGGAGCCTCTACCCTGGGTGTGAATCCTAATGGTAAGTTGTGTTGCTTGCACCAAATACCCCAACCTGCAATAGCATCTTCAAGGTACCCAGTAGATGTGTCAGATGCAAACCAAGACTCTGCTGCAGCAACAACAACATAG 1824 0.4326 MNALIFQPNTASYYPRLDVPQIRTCKSMRELKQVHAFFVKTGQTHDTAIATEILKLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDKHLDALLVFCQMLSEATVDPNQFTFPSVLKACAVMARLEEGKQVHGLLLKFGFVDDEFVVTNLLRMYVMCGNMEDAHGLFHRNVDDVRRLVRDERRREFNVVLCNVMVDGYVRVGNLKAARELFDRMAQRSVVSWNVMISGYSQNGLYKEAKEMFHTMMQMGDVLPNRVTFVSVLPAISRLGALELGKWVHLYTQKNKIQIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHEAEQLILNMPMKPDDVIWKALLGACKVHKNIEIGKRAAEVLMQLAPHDSGAYVALSNMYASSGDWDGVAEVRLMMKDMDIRKDPGCSWIEIEGVIHEFLVEDDSHPRAKDIHSMLREISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLINTIQEHKWESLIVGIHMSTLDEKEEYNTETKLKRKILYNGELSLHSQFSSTLGSDNGNGASTLGVNPNGKLCCLHQIPQPAIASSRYPVDVSDANQDSAAATTT 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2214 607 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 342 - -
Aed7g2214 607 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 342 505 - -
Aed7g2214 607 Pfam E motif 370 432 IPR046848 -
Aed7g2214 607 Pfam PPR repeat family 226 271 IPR002885 -
Aed7g2214 607 TIGRFAM PPR: pentatricopeptide repeat domain 228 258 IPR002885 -
Aed7g2214 607 TIGRFAM PPR: pentatricopeptide repeat domain 197 227 IPR002885 -
Aed7g2214 607 PANTHER - 24 342 - -
Aed7g2214 607 PANTHER - 342 505 - -
Aed7g2214 607 Gene3D Tetratricopeptide repeat domain 176 280 IPR011990 GO:0005515
Aed7g2214 607 Gene3D Tetratricopeptide repeat domain 21 172 IPR011990 GO:0005515
Aed7g2214 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Aed7g2214 607 Gene3D Tetratricopeptide repeat domain 281 488 IPR011990 GO:0005515
Aed7g2214 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Aed7g2214 607 Pfam PPR repeat 197 225 IPR002885 -
Aed7g2214 607 Pfam PPR repeat 155 177 IPR002885 -
Aed7g2214 607 Pfam PPR repeat 302 328 IPR002885 -
Aed7g2214 607 Pfam DYW family of nucleic acid deaminases 468 507 IPR032867 GO:0008270
Aed7g2214 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 225 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2214 Aed-Chr7 24681926 24686398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2214 32 505 Glycoside Hydrolase AT3G49170 29.128 1.42e-71 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2214 - - gmx:100812343 625.935