Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2173 ATGGACGAAAGCCCTGGTGCTCCTGGCAGAAAGCGAGCACACCCTTCTTCTTCTTCTTCTCCATTCTCCATTAAGCCCCAAAACTTCCCTTCCTTCCAAGACATCCCCAATCTCCCTTCCAACATCAAATCCCTCTGCCACCTCATCGCCACCACCTCCGCCGCCACAGTCGAGCACTCCCTCCAATCCGCCGCAATCTCCGTCACTCCCCACGACGTCGAATACGTCCTCAAACTCTCCTACGGCTTCCCCGGCCAAGCCGTCAAATTCTTCCGCTGGAGCGGCCGCCACCTCAACGACAACCACACCCCCTATTCCTGGAACCTCGTCGTCGACATCCTCGGACAAAACCGCTTCTTCGACGCCATGTGGGACGCCATCAAATCAATGAACAAAGAAGGCTTCCTCTCACTCGCCACGTTCGCCTCCGTTTTCGGCAGCTATTCTGCCGCCGACAGAATCCGTGAAGCAATCATGGCCTTCGAAATTATGGAGAATTACGGCTGTGTGAGGGACGTTGTTGCTTTGAATTCTCTCTTGAGTGCATTTTGTAGCAATGCTAGGATTCTCGAAGCTTGTGATTACTTGCAGGTTGCTAAGAAATTCGTAGTGCCGGATACTGACACTTACGCTATTCTAATGGAGGGCTGGGAAGGGGAGAGGGACAGAGAAAAGGGCGTGCTTGGTGCTAAGGAGACATTTGCTGAAATGGTGATTGAGATTGGATGGGATCCTGCTAATGTGCATGGTTATGATTCCTTCTTGTGTACTCTTGTTAGAGGGCCTGATGGATTGCTTGAAGCTATTAAGTTTGTTGATTCAATGAGGGATAGGGGGTGTTACCCCGGTGTAAGGTTTCTCAATGTTGCATTGGATGAGTGTGTTAAGTGTCATGATGTTAGGACTGCTGAGTTTTTCTGGGAGGTGTTGGTGGTGGTTGGGAAGGTCTTGCAGCCTACCACTGAGATGTACAATTTGATGATTGGTTTGTATTGCTATCACGGTGATGCTGATGCTGCCAGGAGGATGCTTGATGAGATGGTTTACCTAGGGGCTTTTCCTGATGTTGTTACTTATAACTTGCTGTTTAAGTTCTTAATCAAGGGGAGGAAGCTGAGACATGCCTCTGCTGTGTTTGTTGAGATGGTGAAGAATGAGTGTGTGCCGGAGCAGGATAGCTGTGATGCTGCGGTTAAGGCCTATGTGGATTGTGGGGAGCCTATTATGGCGATCAAGGTTTGGAAGTGCATGGTGGAGAATTATGAGAAGGATTTGGAGCGGACGGCCAATTTTCTGGTTGTGGGGCTTTGTGATTTGAACAGGGTTCAGGAGGCGGTTAAGTATGCTGAGGATATGATTGACAGGGGAATCAGGTTGTCCTCTTCCACATTGTCGAAGCTGAGACAAAGCCTTATCAAGGAGAAAAAAGAATCTGTGTATGAAGAGCTTCTGAAAAAGTGGAAATCTCACTAG 1473 0.4895 MDESPGAPGRKRAHPSSSSSPFSIKPQNFPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISVTPHDVEYVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGQNRFFDAMWDAIKSMNKEGFLSLATFASVFGSYSAADRIREAIMAFEIMENYGCVRDVVALNSLLSAFCSNARILEACDYLQVAKKFVVPDTDTYAILMEGWEGERDREKGVLGAKETFAEMVIEIGWDPANVHGYDSFLCTLVRGPDGLLEAIKFVDSMRDRGCYPGVRFLNVALDECVKCHDVRTAEFFWEVLVVVGKVLQPTTEMYNLMIGLYCYHGDADAARRMLDEMVYLGAFPDVVTYNLLFKFLIKGRKLRHASAVFVEMVKNECVPEQDSCDAAVKAYVDCGEPIMAIKVWKCMVENYEKDLERTANFLVVGLCDLNRVQEAVKYAEDMIDRGIRLSSSTLSKLRQSLIKEKKESVYEELLKKWKSH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2173 490 MobiDBLite consensus disorder prediction 1 24 - -
Aed7g2173 490 Pfam PPR repeat 105 135 IPR002885 -
Aed7g2173 490 Pfam PPR repeat 428 457 IPR002885 -
Aed7g2173 490 Pfam PPR repeat 398 420 IPR002885 -
Aed7g2173 490 Pfam PPR repeat 140 169 IPR002885 -
Aed7g2173 490 Gene3D Tetratricopeptide repeat domain 371 490 IPR011990 GO:0005515
Aed7g2173 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Aed7g2173 490 PANTHER OS02G0711100 PROTEIN 24 489 - -
Aed7g2173 490 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 24 489 - -
Aed7g2173 490 Gene3D Tetratricopeptide repeat domain 251 370 IPR011990 GO:0005515
Aed7g2173 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Aed7g2173 490 Gene3D Tetratricopeptide repeat domain 80 240 IPR011990 GO:0005515
Aed7g2173 490 Pfam PPR repeat family 319 366 IPR002885 -
Aed7g2173 490 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Aed7g2173 490 TIGRFAM PPR: pentatricopeptide repeat domain 323 348 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2173 Aed-Chr7 24264718 24266190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2173 90 465 Miscellaneous Gene Families AT4G11690 24.011 1.39e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2173 - - gmx:100784707 835.099