Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2158 ATGGAGTCACCTCAGGCGAAGAAATCCGGATTGAACCTCCCAGTTGGGATGTCCGGAACCTCGCTCCGCCTGGACACTGCACCACCATCTTCTACTTCTTCTTATCGTTCCATTGCGAGCCTGAACTCTCCTTCTTCTCTGCGTTCCATCTCGAATCTCACTTCGCCTTCGAAGTCAAGTTCGATGTGCAGCGACAGGTTCATTCCATGCAGGTCTTCGTCTCGACTGCACACATTTGGGCTGGTGGACAGGGCATCGCCGGTGAAGGAAGGCAGTAATGAGGCATACTCCAGGTTGTTGAAATCGGAACTATTTGGATCTGACTTTGCTTCTCCTTCTCTTTCTTCTTCTTCCCCTGCAGGTTCTGCTGCCGCCGCTCCTTCTTTGCCGCTCAGTCCCAGCAAGAACATGCTCCGCTTCAGGACCGATCATTCTGCACCTTCTTCGCCTTACTCGCCCTCCATTTTGGGACAGCAGAATGCTTTTGCCTCCGACTCTTCGACCCCGCCTCCCAAACCTCCTAGGAAAGTCCCCAAGACACCCCACAAGGTTCTGGATGCCCCATCACTTCAAGATGACTTTTACTTGAATCTGGTGGACTGGTCCACACAAAATGTTCTTGCTGTGGGGCTAGGCACTTGTGTATATCTATGGAGCGCTTCAAACAGCCGAGTGACTAAGTTATGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACCCGGGAGGGTTCTTTCATATCTATTGGTACAAGTCTTGGTCAAGTTCAGGTTTGGGATGGAACTCAGTGTAAGAAGGTGAGAACCATGGGTGGGCATCAGACAAGGACTGGTGTCTTGGCATGGAACTCTCGCATTTTGGCTTCAGGGAGCAGAGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTAACAAGCTTGTTGGCCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCCTGGTATGGAATCAGCACTCTCAGCAACCAGTTTTGAGACTTACCGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAAAACAGTCTCCTTGTGTCTGGAGGTGGAACTGCTGATAGGTGTATTCGATTTTGGAACACTACAAATGGTCATCAATTGAATTGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGCTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGGTACTCCCAAAATCAGATCATGGTGTGGAAATATCCATCATTGTCAAAGGTTGCAACTCTAACTGGCCACAGCATGCGAGTGCTGTACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGGGATGAGACTTTACGGTTTTGGAATGTTTTCCCATCAATGAAAGCACCTGCCCCGGTTAAAGATACAGGACTTTGGTCACTGGGGCGCACCCAAATTCGATGA 1503 0.4917 MESPQAKKSGLNLPVGMSGTSLRLDTAPPSSTSSYRSIASLNSPSSLRSISNLTSPSKSSSMCSDRFIPCRSSSRLHTFGLVDRASPVKEGSNEAYSRLLKSELFGSDFASPSLSSSSPAGSAAAAPSLPLSPSKNMLRFRTDHSAPSSPYSPSILGQQNAFASDSSTPPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSTQNVLAVGLGTCVYLWSASNSRVTKLCDLGPYDGVCSVQWTREGSFISIGTSLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFVNKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQNSLLVSGGGTADRCIRFWNTTNGHQLNCVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDTGLWSLGRTQIR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2158 500 PANTHER PROTEIN FIZZY-RELATED 3 9 500 - -
Aed7g2158 500 MobiDBLite consensus disorder prediction 158 183 - -
Aed7g2158 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
Aed7g2158 500 Gene3D - 135 477 IPR015943 GO:0005515
Aed7g2158 500 SUPERFAMILY WD40 repeat-like 170 476 IPR036322 GO:0005515
Aed7g2158 500 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Aed7g2158 500 Pfam Eukaryotic translation initiation factor eIF2A 340 473 IPR013979 -
Aed7g2158 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Aed7g2158 500 MobiDBLite consensus disorder prediction 23 64 - -
Aed7g2158 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 476 IPR001680 GO:0005515
Aed7g2158 500 MobiDBLite consensus disorder prediction 1 64 - -
Aed7g2158 500 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 500 IPR033010 GO:0010997|GO:0097027|GO:1904668
Aed7g2158 500 CDD WD40 216 475 - -
Aed7g2158 500 SMART WD40_4 436 475 IPR001680 GO:0005515
Aed7g2158 500 SMART WD40_4 178 219 IPR001680 GO:0005515
Aed7g2158 500 SMART WD40_4 221 262 IPR001680 GO:0005515
Aed7g2158 500 SMART WD40_4 396 433 IPR001680 GO:0005515
Aed7g2158 500 SMART WD40_4 265 302 IPR001680 GO:0005515
Aed7g2158 500 SMART WD40_4 306 345 IPR001680 GO:0005515
Aed7g2158 500 SMART WD40_4 348 390 IPR001680 GO:0005515
Aed7g2158 500 ProSitePatterns Trp-Asp (WD) repeats signature. 462 476 IPR019775 -
Aed7g2158 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2158 Aed-Chr7 24096027 24105267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2158 310 476 Miscellaneous Gene Families AT5G08390 22.727 2.19e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2158 K03364 - gmx:547741 879.396