Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1981 ATGGACACGCGCGGCCACGATGAGGAGCCACTGAAACCCGTGGTTCTCATTACCGGATGCTCCACGGGAGGGATTGGCCACGCGCTTGCACGTGCCTTCGCGGAGAAGAAGTGCAGGGTGGTGGCCACCAGCAGGTCCCGGTCGAGCATGGCGGAGCTGGAACACGACCAGAGGTTGTTTTTGGAAGAGCTGGATGTTCAGTCCGATGAGAGTGTTCGCAGAGTGGTCGACGCTGTTGTCGACAAGTACGGCCGCATCGACGTGCTGGTTAACAACGCGGGTGTTCAGTGCGTGGGCCCACTCGCCGAGGTTCCTCTCTCTGCCATCCAAAACACTTTCGACACCAATGTCTTTGGTTCCTTGAGAATGGTTCAAGCGGTTGTTCCTCATATGGCAACTAAGAAAAAGGGGAAGATTGTCAATATTGGCAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTACACTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGACTTGAACTTGGACATTTTGGAATTGATGTTGTCAATGTTGTCCCGGGAGCTATCAAATCAAATATTGGAGATTCTGCTATAGCCAGCTACAACCGAATGCCAGAGTGGAAATTATTCAAGCCTTTTGAAGCAGCAATCAGAGATAGAGCTTATTTTTCTCAGAAGTCCAAAACAACCCCTACAGATGAGTTTGCTATAAACACTGTAGCTGCGGTCCTTAAGGAGAAACCGCCTGCGTGGTTCACCTATGGCCATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTCTTTTGAAGAAAGCAATGAAAGGCTGA 852 0.4918 MDTRGHDEEPLKPVVLITGCSTGGIGHALARAFAEKKCRVVATSRSRSSMAELEHDQRLFLEELDVQSDESVRRVVDAVVDKYGRIDVLVNNAGVQCVGPLAEVPLSAIQNTFDTNVFGSLRMVQAVVPHMATKKKGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRLELGHFGIDVVNVVPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKSKTTPTDEFAINTVAAVLKEKPPAWFTYGHYSTVMAIMYHLPISVRDFLLKKAMKG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1981 283 Gene3D - 13 271 - -
Aed7g1981 283 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 193 - -
Aed7g1981 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 267 IPR036291 -
Aed7g1981 283 PANTHER BNAANNG04690D PROTEIN 12 281 - -
Aed7g1981 283 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Aed7g1981 283 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Aed7g1981 283 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Aed7g1981 283 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Aed7g1981 283 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Aed7g1981 283 Pfam short chain dehydrogenase 14 197 IPR002347 -
Aed7g1981 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 12 281 - -
Aed7g1981 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Aed7g1981 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Aed7g1981 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Aed7g1981 283 CDD 17beta-HSD-like_SDR_c 14 259 - -
Aed7g1981 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1981 Aed-Chr7 22729074 22730564 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1981 14 194 Acyl Lipid Metabolism Gene Families AT3G55310 32.124 3.81e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1981 - - gmx:100789660 545.043