Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1957 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAGGCTCTTGGCGACCAATTCCCAGAAGGAGAACGTTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCACCCAAACGATTTGTACAAAGATTGAAAAAACAGAATGAGCTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAAGGCCAGGCTGCAAACAATGATCAAGAGACTTCACCACCGTCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCCAATGGTGTTAAAAAGGAGCCTTTAGTTACTTGGGTTCACAAAAATTTTCAGGGAATACTCACCAACGAGACTAGGTGCCTGCGATGTGAAACTGTAACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATAGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACGGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACGTCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAGTTGGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCCCTTGAGCTGAAATTGAGTGATACTGCTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGTCCCAACCACGGGCATTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCGCAAGAATATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAGGAACTAG 993 0.4189 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEGQAANNDQETSPPSEKAANGPKNGLANGVKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNRN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1957 330 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Aed7g1957 330 MobiDBLite consensus disorder prediction 95 109 - -
Aed7g1957 330 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 255 273 IPR018200 GO:0004843|GO:0006511
Aed7g1957 330 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 39 - -
Aed7g1957 330 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 324 IPR028889 -
Aed7g1957 330 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 40 328 - -
Aed7g1957 330 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 39 - -
Aed7g1957 330 MobiDBLite consensus disorder prediction 95 119 - -
Aed7g1957 330 Pfam Ubiquitin carboxyl-terminal hydrolase 44 321 IPR001394 GO:0004843|GO:0016579
Aed7g1957 330 SUPERFAMILY Cysteine proteinases 21 323 IPR038765 -
Aed7g1957 330 Gene3D Cysteine proteinases 5 323 - -
Aed7g1957 330 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 40 328 - -
Aed7g1957 330 CDD Peptidase_C19G 24 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1957 Aed-Chr7 22514129 22520335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1957 24 295 Miscellaneous Gene Families AT4G31670 25.079 5.06e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1957 K11842 - gmx:100305765 647.121