Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1946 ATGACGTCTTCAGTTGTTGAAGGTGGAGCACACGACGAGGGTAAACACGAGCCCTCGGATTTGATCACGGAAAACATCAATCTCACGCCTCCAAACCTTTCACTTCCCACTGAAACATTCTTGAGAGCAGCGATTTCCCTCAAGGACAAGGTGGTGGAGGAAACTTGGAACCGGAGAGATCAAGTGGTTGATCCGACGGTGTACACGGGACTGTTGGGCACCGCCTTCACATGCTTGCGCTCGTACCAGGTTACCGGTTGCCGGAGCGACTTGCTATTATGCAGAGATATCATTGACAAGTGTGTTGACGCTGCACGTGCCTCCCTCAGGCACGTGACTTTTATGTGCGGTAGAGGTGGCGTTTATGCGCTTGGTGCTGTCGTTGCCAATTACATGGGGGACCCCAAAAAACGTGACCTGTTTTTGGGTCTATTCATTGAGGTGGCAAAAGAGAGGGCCCTACCAGTTGGACCAGAGGAAGGTGGTTTTGGAATGTCATATGATCTTCTCTATGGACGAGCTGGGTTCTTATGGGGTGCATTGTTCGTGAACAAGCACCTAGGAGAAGATGCAGTGCCCAAAGACATTTTGATGCCTATTATTGATGCGGTGTTGGCTGGTGGTAGAGCAGGAGCATCTGATATTAAAGAGTGTTCATTGATGTATAGATGGCATGGAACTAGGTACTTGGGTGCAGCAAATGGCCTTGCTGGTATCCTTCATGTGCTGCTACATTTTCCACTTCCTAGTGAGGATGCTGAGGATGTCAAGGGAACTTTGAGGTACTTAATGAGTAAGCGTTTCCCTCATAGTGGAAACTACCCTTCCAGCGAAGGGAATCCAAGGGATAAGTTAGTGCAATGGGGTCATGGCGCAACTGGCATGGCCATCACATTGTCTAAAGCAGCACAGGTGTTTCCTAATGACAGAGAACTACGAGATGCTGCAATAGAAGCAGGGGAAGTTGTATGGAAGAGTGGATTGGTGAAGAAGGTGGGACTTGCTGATGGGGTATCTGGAAATGCCTATGCATTCCTTTCCCTTTATCGACTCACCAAAGAGAGTATATACGAAGAGAGAGCAAAATCATTCGCTTCCTTCTTGTATGATAATGCAAAATCTCTAGCTTCTGACAATGGCTATTCACTTTTCCAAGGTCTTGCTGGGACAGCATGCCTCTGGTTTGATCTGCTTGCACCCGACAACTCTAAGTTCCCAGGCTATGAATTATAA 1233 0.4785 MTSSVVEGGAHDEGKHEPSDLITENINLTPPNLSLPTETFLRAAISLKDKVVEETWNRRDQVVDPTVYTGLLGTAFTCLRSYQVTGCRSDLLLCRDIIDKCVDAARASLRHVTFMCGRGGVYALGAVVANYMGDPKKRDLFLGLFIEVAKERALPVGPEEGGFGMSYDLLYGRAGFLWGALFVNKHLGEDAVPKDILMPIIDAVLAGGRAGASDIKECSLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLMSKRFPHSGNYPSSEGNPRDKLVQWGHGATGMAITLSKAAQVFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYRLTKESIYEERAKSFASFLYDNAKSLASDNGYSLFQGLAGTACLWFDLLAPDNSKFPGYEL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1946 410 PRINTS Eukaryotic LanC-like protein family signature 396 410 IPR020464 -
Aed7g1946 410 PRINTS Eukaryotic LanC-like protein family signature 197 212 IPR020464 -
Aed7g1946 410 PRINTS Eukaryotic LanC-like protein family signature 265 280 IPR020464 -
Aed7g1946 410 PRINTS Eukaryotic LanC-like protein family signature 348 366 IPR020464 -
Aed7g1946 410 PRINTS Eukaryotic LanC-like protein family signature 303 324 IPR020464 -
Aed7g1946 410 CDD euk_LANCL 67 406 - -
Aed7g1946 410 Pfam Lanthionine synthetase C-like protein 62 410 IPR007822 -
Aed7g1946 410 PRINTS LanC-like protein superfamily signature 64 82 IPR007822 -
Aed7g1946 410 PRINTS LanC-like protein superfamily signature 229 245 IPR007822 -
Aed7g1946 410 PRINTS LanC-like protein superfamily signature 332 345 IPR007822 -
Aed7g1946 410 PRINTS LanC-like protein superfamily signature 285 305 IPR007822 -
Aed7g1946 410 PRINTS LanC-like protein superfamily signature 167 182 IPR007822 -
Aed7g1946 410 PRINTS LanC-like protein superfamily signature 380 397 IPR007822 -
Aed7g1946 410 PANTHER LANC-LIKE PROTEIN 18 410 - -
Aed7g1946 410 Gene3D - 19 410 IPR012341 GO:0005975
Aed7g1946 410 SMART LANC_like_2 61 410 IPR007822 -
Aed7g1946 410 SUPERFAMILY LanC-like 54 410 - -
Aed7g1946 410 MobiDBLite consensus disorder prediction 1 23 - -
Aed7g1946 410 PANTHER LANC-LIKE PROTEIN GCL1 18 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1946 Aed-Chr7 22432373 22447520 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1946 - - gmx:100785406 771.926