Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1915 ATGATAGGATGGAATGCATCAGCATCATTGTTTTTGAAAAGACTAATCTTAAAGAACTTGTTTGAAGTGGAAGAAAAGGGTGAACACATTGACTTGACCTTGCTAGATTCCTTCTCAGAGCACTCTTCTTCTCTCTGTCATAATTCATTTGCAATTCTTGTTGAAACGATGCATCTAGAGCTAGAGGCTTGGACAATTTTGGTTGCTGTTGTGTGCATCTTGGTGTTTCTTCTGAAGGAGGTTGTTATGGGAGGGAAGAGTTCAAAAGGGAGTGGTAGGAGTAGGAGGTATGATTTTGGTGCTTCTTCATCTTCATCATGGGATAATAATAACTATGGTGGATACCCCTCACAATCACCACACCCTTCTTATCAAACACCTCAGCACCCACGTGCATCAGCATCAGCTCCATTCTATGATTATGCTGCACAGCCAAAAAGGAAGTTGGATAAGAAGTATTCCAGGATAGCTGATAATTACCGTTCTTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGATCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGTCAAAACCCTTATGAACAAGCAATTTCCATTATCGGAAAAACTTTATCTGCTTTCGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGTTTCTTTTCAGAAGAGAGGTTCTGCAATGGGTTTGAGGAAGTTCTGACACGATACAGACACATTAATCCTTACCTCAAACTCGCAGGACCCACTTCATTTGCCCCAATTATTGAAATGGCTACGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTGTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCGTTGACACACACCATGGCAACTTAAGTCCACAAGAGCGGAACACAATAGATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGAAGAGGAATGTAGATTCAACCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCAACTCAGTACAAGGCAACCCTAGAGCTTGGCATATTGGGTTCAAGGAGGGGACATTCACCCGAAAGGGTTGCTCTACCCCCACCTCTTTATAGTAGGACTTCTTCCAGCATCAGCACAAAATCTACAAGGTCAAACAGTTTTCAGCAGAGGACACCTACACATACTAGCTACAATAGTGGTGTTCACACAGAGCCATCAGCAAGTTCTTTATATGATAATAAGGTTTGCCCGATTTGTCTTACCAATGGAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAGTGTGGAGAAGACCTCCAATGCTGTCCCATTTGCCGGAGCACAATCCAGACTAGAATAAAGCTTTACTAG 1569 0.4143 MIGWNASASLFLKRLILKNLFEVEEKGEHIDLTLLDSFSEHSSSLCHNSFAILVETMHLELEAWTILVAVVCILVFLLKEVVMGGKSSKGSGRSRRYDFGASSSSSWDNNNYGGYPSQSPHPSYQTPQHPRASASAPFYDYAAQPKRKLDKKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLTRYRHINPYLKLAGPTSFAPIIEMATTIVEQSGGQYHVLLIIADGQVTRSVDTHHGNLSPQERNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMKRNVDSTRKETDFALSALMEIPTQYKATLELGILGSRRGHSPERVALPPPLYSRTSSSISTKSTRSNSFQQRTPTHTSYNSGVHTEPSASSLYDNKVCPICLTNGKDMAFGCGHQTCCECGEDLQCCPICRSTIQTRIKLY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1915 522 SMART VWA_4 177 380 IPR002035 -
Aed7g1915 522 MobiDBLite consensus disorder prediction 110 132 - -
Aed7g1915 522 PANTHER COPINE FAMILY PROTEIN 1 83 522 - -
Aed7g1915 522 Pfam Copine 202 415 IPR010734 -
Aed7g1915 522 CDD vWA_copine_like 156 406 IPR010734 -
Aed7g1915 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 522 IPR013083 -
Aed7g1915 522 MobiDBLite consensus disorder prediction 420 470 - -
Aed7g1915 522 MobiDBLite consensus disorder prediction 110 133 - -
Aed7g1915 522 ProSiteProfiles Zinc finger RING-type profile. 479 512 IPR001841 -
Aed7g1915 522 Pfam Zinc finger, C3HC4 type (RING finger) 476 517 - -
Aed7g1915 522 PANTHER RING-FINGER PROTEIN 83 522 - -
Aed7g1915 522 SUPERFAMILY RING/U-box 472 518 - -
Aed7g1915 522 SUPERFAMILY vWA-like 178 361 IPR036465 -
Aed7g1915 522 MobiDBLite consensus disorder prediction 432 470 - -
Aed7g1915 522 CDD RING-HC_RGLG_plant 478 522 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1915 Aed-Chr7 22211970 22219583 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1915 K16280 - gmx:100798816 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1915 7 22211970 22219583 Aed7g1915 7 22211970 22219583 ECH