LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1846	ATGTCGCGGGTTGATAACAGAAACTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGTCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGAACTACTTGTAACATGCGTAATTGCACTCAACCAAGGCCAGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTCCCATCATATGGGTCTTCTCTGTTCAATGGATCAGCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAACTATGGTAGTCGCCTTTCTGCTGGCAGCCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACCGGTGGACCAGTGATGGGAAATGGTGGAATCTATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGTGTGCCTATTGGACCTGGGACAATGGGTGCCAGGCCAGGATTTTTTCATGATGACAAGTCACAGAAAAAAGGTACAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTCTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCTAAACCTGGATCCCAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAAGGAAGCTGGAAGTGTGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGTTTGAACAGTTAACTGTGGATGTCAAGTGGGGTATTTGCCGTGTCTTATGA	906	0.4536	MSRVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPSYGSSLFNGSAVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTGGPVMGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFHDDKSQKKGTDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSPAADQNDQFEQLTVDVKWGICRVL	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1846	301	MobiDBLite	consensus disorder prediction	1	25	-	-
	Aed7g1846	301	Pfam	Zn-finger in Ran binding protein and others	194	223	IPR001876	-
	Aed7g1846	301	Pfam	Zn-finger in Ran binding protein and others	239	269	IPR001876	-
	Aed7g1846	301	Pfam	Zn-finger in Ran binding protein and others	22	44	IPR001876	-
	Aed7g1846	301	PANTHER	OS08G0521400 PROTEIN	5	280	-	-
	Aed7g1846	301	Gene3D	-	185	225	-	-
	Aed7g1846	301	Gene3D	-	14	54	-	-
	Aed7g1846	301	Gene3D	-	228	271	-	-
	Aed7g1846	301	SUPERFAMILY	Ran binding protein zinc finger-like	16	54	IPR036443	-
	Aed7g1846	301	MobiDBLite	consensus disorder prediction	50	75	-	-
	Aed7g1846	301	MobiDBLite	consensus disorder prediction	220	242	-	-
	Aed7g1846	301	SUPERFAMILY	Ran binding protein zinc finger-like	233	270	IPR036443	-
	Aed7g1846	301	SUPERFAMILY	Ran binding protein zinc finger-like	187	225	IPR036443	-
	Aed7g1846	301	PANTHER	ZINC FINGER PROTEIN	5	280	-	-
	Aed7g1846	301	MobiDBLite	consensus disorder prediction	264	285	-	-
	Aed7g1846	301	MobiDBLite	consensus disorder prediction	9	25	-	-
	Aed7g1846	301	SMART	zf_4	241	267	IPR001876	-
	Aed7g1846	301	SMART	zf_4	24	50	IPR001876	-
	Aed7g1846	301	SMART	zf_4	195	221	IPR001876	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1846	Aed-Chr7	21748395	21752092	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1846	181	272	EF-hand Containing Proteins	AT1G55040	31.522	4.65e-07	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1846	-		-	gmx:100796535	606.675