Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1829 ATGGAGGAGGATGATGGATTGAAGACGCTCCAATACTTGTCGCTCCTCTCCAAGGTTTGCACCGAGTTGGAGTCTCACACCGGCACCGCCGACAAGGTCCTTGCCGAGTTCATCACCGACTTGGCCACTTCATCCCATAACCTTCAGGAATTCCACGCCAAACTCAACCACAACGGTGCCGATATGCCTCATTACCTTGTCCGAACGCTCTTCACCATTATTCACGCCATTCTCATTCCCAACCCTACTAACCGCAGAGAAGAAGACCGTGTTGTTGGTTCTCTGAAGAAGAGAATCAACTCTCCGGAAATACGGGAGGCAAAACAGTTGAATGAAGAAGAAGATCCTCCCGAAATTGAGTTGAATCAGGATGAACCCGCATTCTTGCGAGGGCAGACCAAATACTCAGTGGACATGTCCCCTGTTAGGATTTTCAAGAATCCAGAGGGTTCTCTGCTTCGCGCCGCTGCACTCCACTCTGCACTTACAAAAGAGCGCAGGGAAGTACGAGAACAACAACACCGGTCAGTGTTTGATTCAATTCCAAAGGATCTCAATCGCCCTTGGGAAGACCCTATGCCGGAGATAGGTGCAGAAAGGCACCTCGCTCACGAGCTTCGGGGCGTTGGCTTATCGGCCTATGACATGCCGGAATGGAAGAAAGAGGCCTATGAGAAAACCACTACCTTTGGCCAGAAGTCAAAGCTTTCTTCTATTCAGGATCAGAGGCTGAGTTTGCCAATTTACAAGTTAAAGAAGGAATTGATCCAGGCTGTGCATGATAATCAAGTGTTGCTACTCATTGGAGAAACCGGTTCTGGGAAGACTACTCAGGTTACTCAATATCTTGCTGAAGCTGGTTACACCAAAAAAGGTGGCAAAATTGGATGTACTCAACCCCGCAGGGTGGCGGCCACGTCGGTTGCAAAGAGGGTTGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCAGTTTGAGAATTGTACCGGTCCCGACACCGTCATCAAGTACATGACTGATGGTATGCTTCTTAGGGAAATATTGATCGATGAGAATCTGTCACAGTACTCTGTTATAATGCTTGATGAAGCCCACGAGAGAACTATCAACACCGATGTTCTTTTTGGATTGCTGAAGCAGCTTGTGAAGCGTAGACCCGAGTTGAGATTGATTGTCACGTCTGCTACTCTGGATGCTGATAAATTTTCAGGATATTTCTTTGACTGCAGCATCTTTACCATTCCTGGTAGAACGTTTCCTGTGGAGATACTCTATGCTAAACAGCCTGAAAGTGATTACTTGGATGCTGCCTTTATCATTGTTCTACAGATACATTTGACAGAGCCTGAAGGAGACATTCTTCTATTCTTGACCGGTCAAGAGGAAATTGATTTTGCTTGCGAATCACTCCATGAGAGAATGAAGGAATTAGGTAATAAGAATGTTGTTCCGGAGCTGATAATTTTACCGGTTTATGGTGCTCTTCCTAGTGAAATGCAGTCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTAGTTGTGGCTACAAACATTGCTGAGGCTTCTTTGACTATCGATGGGATATTTTATGTAATTGATCCTGGATTTGCTAAGCTGAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCACAGGCATCAGCCAAGCAAAGAGCTGGACGTGCAGGGCGAACTGGACCGGGGAAGTGTTATCGCCTCTATACCGAGACTGCATACAGGAATGAGATGTCTCCCACTGCAATTCCAGAAATTCAAAGGATCAATCTCGGAACAACTACTCTTAATATGAAAGCTATGGGGATAAACGATCTACTGTCATTTGATTTTATGGATGCACCATCAACCCAAGCACTTGTTTCTGCCATGGGGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGGCAGATTTTCCTTTGGATCCACCATTGTCCAAAATGCTGCTTGCCAGTGTGAGCCTCGGATGCAGTCATGAGATTTTAACCATAATTTCCATGATCCAAACTGCCAATATTTTTCACAGGCCTAGGGAAAAACAAGCTCAAGCAGATCAGAAGAGGGCGAAGTTTTTCCATCCAGAAGGTGACCATCTCACATTACTTTCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCCGGGCCGTGGTGTTTTGAGAACTTTGTTCAATCAAGATCTTTGAGAAGAGCACGGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTATGATAGCTATACATTCTTCTAA 2340 0.4517 MEEDDGLKTLQYLSLLSKVCTELESHTGTADKVLAEFITDLATSSHNLQEFHAKLNHNGADMPHYLVRTLFTIIHAILIPNPTNRREEDRVVGSLKKRINSPEIREAKQLNEEEDPPEIELNQDEPAFLRGQTKYSVDMSPVRIFKNPEGSLLRAAALHSALTKERREVREQQHRSVFDSIPKDLNRPWEDPMPEIGAERHLAHELRGVGLSAYDMPEWKKEAYEKTTTFGQKSKLSSIQDQRLSLPIYKLKKELIQAVHDNQVLLLIGETGSGKTTQVTQYLAEAGYTKKGGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIQFENCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPELRLIVTSATLDADKFSGYFFDCSIFTIPGRTFPVEILYAKQPESDYLDAAFIIVLQIHLTEPEGDILLFLTGQEEIDFACESLHERMKELGNKNVVPELIILPVYGALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKLNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTETAYRNEMSPTAIPEIQRINLGTTTLNMKAMGINDLLSFDFMDAPSTQALVSAMGQLYSLGALDEEGLLTKLGRKMADFPLDPPLSKMLLASVSLGCSHEILTIISMIQTANIFHRPREKQAQADQKRAKFFHPEGDHLTLLSVYEAWKAKNFSGPWCFENFVQSRSLRRARDVRKQLLTIMDKYDSYTFF 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1829 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 776 IPR027417 -
Aed7g1829 779 Pfam Helicase conserved C-terminal domain 447 579 IPR001650 -
Aed7g1829 779 Gene3D - 423 599 IPR027417 -
Aed7g1829 779 SMART ultradead3 244 429 IPR014001 -
Aed7g1829 779 PANTHER - 117 772 - -
Aed7g1829 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 438 620 IPR001650 -
Aed7g1829 779 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 362 371 IPR002464 -
Aed7g1829 779 Pfam DEAD/DEAH box helicase 252 403 IPR011545 GO:0003676|GO:0005524
Aed7g1829 779 Pfam Helicase associated domain (HA2) 641 729 IPR007502 GO:0004386
Aed7g1829 779 PANTHER ATP-DEPENDENT RNA HELICASE 117 772 - -
Aed7g1829 779 SMART ha2_5 640 730 IPR007502 GO:0004386
Aed7g1829 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 256 420 IPR014001 -
Aed7g1829 779 SMART helicmild6 473 579 IPR001650 -
Aed7g1829 779 CDD SF2_C_RHA 424 587 - -
Aed7g1829 779 Gene3D - 208 422 IPR027417 -
Aed7g1829 779 Gene3D - 624 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1829 Aed-Chr7 21654661 21657000 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1829 K12818 - gmx:100815173 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1250 11 17672719 17674675 Aed7g1829 7 21654661 21657000 PCT