Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1827 ATGGCGCCTCCCATTCCCAAAGTTCTCATGGTCGCAGAGAAGCCTAGCATCGCTCTCTCTATTGCTTCCGTTCTCTCTCACTCTCAGATGTTTACGAGAAGGGGGAGCACGGAAGTTCATGAATTTGATGGGAAGTTTCTTGGATCGCCTGCATATTTTAAAGTAACATCAGTTATTGGGCACGTATTCAGTGTAGATTTTCCTGCTAAATATCAAGATTGGTCAGCCACAGATCCGTTAGATCTTTTTCAGGCTCAGGCGCATATTTGTAAACATTTAAATCAAGAAGCTCGTGGATGTCGTTATTTGGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAGGTTATAAAGTCTACTGGTTTCCATATAAATGATACTTATCGTGCACGGTTCTCTTCTGTTACTGAGAAAGATGTTGTGAAGGCTCTAGACAACCTTGTCAGACCCAACCGAGATGAGGCACTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTCCAAACGAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCCAGAGTCATCTCCTATGGACCATGTCAAACTCCTACCTTAGGATTTTGTGTGCAGCGGTATTTACAAATAAATACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAGTGGCTATGAAATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTGGCTATGATGTTTCAAAAGCTGGTTTCTGAAGATGGACTTTTGGAAGTTACTGAAATATCAGAAAAACAGGAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTAAAGATGGCTATGCAATTAGCTGAACGTTTATATACTCAAGGTTTCATCAGCTATCCACGCACGGAAAGCACTGCATACCCTCCTTCATTTGACTTTCGTGGTGCACTCTCTGCACAAACAAATAATCCAACATGGGGTAATTACGTTCAAGGGCTACTCGCCAATGGTTATCAAAAACCTCGATCGGGAACAGATGTAGGTGACCATCCTCCCATTACTCCAATGAGATCAGCAGCAGAAGATATGCTGGGAAATGATGCTTGGAAGCTGTACCAATATATTTGTCAATACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATATAAGGAGAAAGGTTGAATTTTCCATTGGCGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTGTCACCAAAGGATTTACTGTTATTATGCCTTGGTTGGCCATAAATGATAAAAATATTCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCAAAATTGGAGCTCTATGAGGGGAGTACCAGTCCTCCAGATTTCCTTACTGAAAGTGAGCTAATATCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCGATTCCAGTACATATTAACAACATATGTGAGCGAAATTATGTGCAGGTACAAGCAGGTAGAAAGCTTGCCCCAACCACGTTAGGCATAACATTAGTAAGAGGTTATCAAACAATAGATCCAGATCTCTGCCTGCCTGATATTCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCCAAGGGTCAGGTGGATCATCGTCATGTGGTGCAGCATGTAATCCAACAGTTCATGCAGAAGTTTAGTTACTTTGTTAAAAAGATTGAAGACATGGATGCGTTATTTGAAGCTCAATTTTCCACACTAACTGAGTCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGAGATATATGAAGTACATTTCTACTCAGCCAGCACGATTGTATTGTGGTATATGTGAAGAGGTTTATTATCTTCCACAGAAGGGTACAATCAAGTTGTACAAAGAATTGTCTTGTCCTCTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCCGGCCCAGATGGTAAATCGTTCCCACTATGCCCATATTGCTACAGCAATCCCCCATTTGAAGGTATTGAAGCACTCATCAACACGGCTAAAACTGGTGCTTCTGGCAAGATTGGCAAGGGAGCTGGCATGCCCTGCAACCTATGCCCTCATCCCACTTGCCCAAATTCACTGGTTTCCCAGGGTGTATGTGCTTGTCCAGAGTGCAGTGGAACACTTGTCTTAGACCCAATAAGTGCTCCCAGATGGAGACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCACAAGGTGCTCATAGAATATCCACAACTAAAGAGCGGTGCCCTGAATGTGACTCCTCAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTCGAGGACGGAGCTACCTTGCACCGTGGTTGCATTCTATGTGATGAGTTGCTACATTCCCTTGTGGAAATGAAACATGGTAGAAGTTTCAGGCATATGGGTTCACGAGGAAGAGGCAGAGGAGCAAGAAAAGGTGGAAGGGGCAGAGGACGCGGGGGTGGAAAAATGATGGATCCAAAAATGAGCTTCCGAGATTTCTGA 2532 0.4226 MAPPIPKVLMVAEKPSIALSIASVLSHSQMFTRRGSTEVHEFDGKFLGSPAYFKVTSVIGHVFSVDFPAKYQDWSATDPLDLFQAQAHICKHLNQEARGCRYLVLWLDCDREGENICFEVIKSTGFHINDTYRARFSSVTEKDVVKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQSGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKMAMQLAERLYTQGFISYPRTESTAYPPSFDFRGALSAQTNNPTWGNYVQGLLANGYQKPRSGTDVGDHPPITPMRSAAEDMLGNDAWKLYQYICQYFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVVTKGFTVIMPWLAINDKNIPSFIKGQKIEVSKLELYEGSTSPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLAPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHRHVVQHVIQQFMQKFSYFVKKIEDMDALFEAQFSTLTESGRILSKCGKCLRYMKYISTQPARLYCGICEEVYYLPQKGTIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYSNPPFEGIEALINTAKTGASGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPISAPRWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKTTPLEDGATLHRGCILCDELLHSLVEMKHGRSFRHMGSRGRGRGARKGGRGRGRGGGKMMDPKMSFRDF 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1827 843 PANTHER PROKARYOTIC DNA TOPOISOMERASE 6 821 IPR000380 GO:0003677|GO:0003917|GO:0006265
Aed7g1827 843 SMART topIaneu2 272 516 IPR003602 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 SMART topIban2 130 226 IPR003601 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 PANTHER DNA TOPOISOMERASE 3-BETA-1 6 821 - -
Aed7g1827 843 SMART toprim5 7 129 IPR006171 -
Aed7g1827 843 Gene3D Topoisomerase I, domain 4 280 394 IPR013826 -
Aed7g1827 843 PRINTS Prokaryotic DNA topoisomerase I signature 478 492 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 PRINTS Prokaryotic DNA topoisomerase I signature 303 312 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 PRINTS Prokaryotic DNA topoisomerase I signature 103 116 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 PRINTS Prokaryotic DNA topoisomerase I signature 196 214 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 PRINTS Prokaryotic DNA topoisomerase I signature 380 396 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 MobiDBLite consensus disorder prediction 808 827 - -
Aed7g1827 843 CDD TOPRIM_TopoIA_TopoIII 7 151 IPR034144 -
Aed7g1827 843 Pfam Toprim domain 8 138 IPR006171 -
Aed7g1827 843 Gene3D - 4 154 - -
Aed7g1827 843 MobiDBLite consensus disorder prediction 828 843 - -
Aed7g1827 843 Gene3D Topoisomerase I, domain 3 220 462 IPR013825 -
Aed7g1827 843 Gene3D Topoisomerase I, domain 2 161 564 IPR013824 -
Aed7g1827 843 SUPERFAMILY Prokaryotic type I DNA topoisomerase 7 604 IPR023405 -
Aed7g1827 843 CDD TOP1Ac 157 564 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aed7g1827 843 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 298 312 IPR023406 GO:0003917
Aed7g1827 843 ProSiteProfiles Toprim domain profile. 7 138 IPR006171 -
Aed7g1827 843 MobiDBLite consensus disorder prediction 808 843 - -
Aed7g1827 843 Pfam DNA topoisomerase 154 554 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1827 Aed-Chr7 21635500 21645367 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1827 K03165 - gmx:100791807 1630.54