Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1820 CATTCAAACAAAAGCTTCCAGCTTTCAAAACTTGGAAAGCTGGCACCAGTAATTGATTCTCACGCGTCCCACAATCCATATTCTCAGTCATATTTCCCTAAACCTTGTCTCTTCTTTATATATATATACTCGCAATACATCCCTTCATATCACACAACATTTACATCTCTAGCTCTCACTTTCTCCAATATATATTATATGATGGCTTCTACTCGCAGTGTGCTTATGGTAATGGTGGTGGTTGGGTCCATGGTGGCTTCATGTGGTGCAACCTTCTACCAAGACTTTGATCTAACGTGGGGTGATGAGCGTGCTAAGATATTGAATGGTGGTCAGCTTCTATCTCTTTCTCTTGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGCCTATCTTTTTGGCAGGATCGATATGCAACTCAAGCTCGTTTCAGGCAACTCTGCCGGCACTGTTACTGCTTACTACTTGTCGTCTGAAGGGGCAAGTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGCGATCCCTACATTCTCCACACAAACGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAGCAGTTCTACCTCTGGTTCGATCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCTCAACACATTATATTCTTGGTGGACAACATTCCCATAAGGGTGTTCAAGAATGCCGAGACAATTGGCGTTCCTTTCCCAAAGAAGCAACCCATGAGAATCTATTCCAGCTTGTGGAACGCTGATGACTGGGCCACCAGAGGCGGTTTGGTGAAAACTGATTGGTCCAAGGCACCCTTCACAGCATACTACCGCAATTTCAAAGCCACAGAGACAGAGACAGAGTTCTCCACCTCTGATGCTGCAAGGCAGAGCAAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAGACTCAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCTGCTGAGTGCACCCGCCATTAA 1035 0.457 HSNKSFQLSKLGKLAPVIDSHASHNPYSQSYFPKPCLFFIYIYSQYIPSYHTTFTSLALTFSNIYYMMASTRSVLMVMVVVGSMVASCGATFYQDFDLTWGDERAKILNGGQLLSLSLDKVSGSGFQSKKAYLFGRIDMQLKLVSGNSAGTVTAYYLSSEGASHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETIGVPFPKKQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATETETEFSTSDAARQSKSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGIPAECTRH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1820 344 Gene3D - 77 344 - -
Aed7g1820 344 ProSitePatterns Glycosyl hydrolases family 16 active sites. 166 176 IPR008263 GO:0004553|GO:0005975
Aed7g1820 344 PIRSF EndGlu_transf 57 344 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed7g1820 344 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 59 280 IPR000757 GO:0004553|GO:0005975
Aed7g1820 344 PRINTS Glycosyl hydrolase family 16 signature 200 217 IPR008264 GO:0004553|GO:0005975
Aed7g1820 344 PRINTS Glycosyl hydrolase family 16 signature 124 142 IPR008264 GO:0004553|GO:0005975
Aed7g1820 344 PRINTS Glycosyl hydrolase family 16 signature 182 195 IPR008264 GO:0004553|GO:0005975
Aed7g1820 344 Pfam Glycosyl hydrolases family 16 93 273 IPR000757 GO:0004553|GO:0005975
Aed7g1820 344 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 72 343 - -
Aed7g1820 344 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 72 343 IPR044791 GO:0004553
Aed7g1820 344 SUPERFAMILY Concanavalin A-like lectins/glucanases 90 343 IPR013320 -
Aed7g1820 344 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 301 341 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed7g1820 344 CDD GH16_XET 89 341 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1820 Aed-Chr7 21599285 21600995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1820 72 343 Glycoside Hydrolase AT3G23730 71.277 9.55e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1820 K08235 - gmx:100784191 499.59