Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1815 ATGTCAGTCGTTCAATCTCTCCAGTCTCAACTGTGCACCGTTGCAAGGCTGAGTCCATTGGTGGCGAAGAAGCTTCACGCCCAAATCATAAAATATGGTCTGAACCAACACCAACCCATCCCCAACACTCTCTTAGACGCATACGGCAAATGCGGTCTCATCGAAGAAGCACTCCAACTGTTCGACGCATTACCCCGCCGAGACCCCGTCGCATGGGCCTCCCTCCTCACCGCCTGCAACCTCTCCAACCGCCCTCACCGCGCCCTCTCCATCTCACGCTCCCTTCTCGCCACCGGCCTCCACCACCCCGACCACTTCGTCTTCGCCTCCCTCGTGAAGGTTTGTGCTAACTTGGGTGCTCCTCACCTCAAACAAGGGAAGCAAGTCCATGCTCGCTTCTTCCTCTCGCCCTTCTCCCATGACGACGTTGTCAAGTCATCGCTAATTGACATGTACGCGAAATTCGGGATGCCCCATTACGGGCGTGCCGTTTTCGACTCCATTTCTTCGTTGAATTCGATTTCTTGGACTGCCATGATATCTGGGTATGCGCGTCGTGGCCGGAATGTGGTTGGTGCTTGTGCTAATTTAGCTCTTTGGAAGCTAGGGAAACAGATGCACGGTGTGGTTACAACACTTGGCTATGAGTCTTGCTTGTTTATAAGCAATGCGCTTATAGATATGTATGCAAAATGCAGTGATCTTGTTGCTGCAAAGTATATCTTCTGTGAAATGTGCAGAAAGGATGTGGTTACTTGGACATTGATAATTGCTGGCACTGCCCAGCATGGGCAGGCTGAGGAGGCATTGGCTTTGTATGATGAAATGGTTTTGGCTGGGATTAAGCCAAATGAAGTGACCTATGTTGGGTTGCTTCATGCTTGTAGTCATGCTGGCCTAGTTAGCAAGGGCAGGGCTTTGTCAGGCCCATGGTTGAAGACTATGGAGTTACACCCTCTCTGCATCACTATACTTGTTTGTTGGATCTTTTTAGTTGATCAGGGCACCTTGATGAGGCTGAAAATCTCATTAGAACAATGCCAGTCAACCCCAATGAACCTACTTGGGCTGCTTTGCTCAGTGCTTCGCCATGGTAACACCCAGATGGCAGTTAGGATTGCTGATCTTCTGTTAAATTTAAAACCAGAAGATCCTTCCTCTTATATACTGTTATCTAACGTATATGCTGGAGCTGGTATGTGGGAGGATGTTTCGAAAGTGAGAAAGTTGATGATGGTCATGGAAGTTAAAAAGGAACCAGTTGCATTGACTTGGGAAAGGAAAGACATGTTTTATGCTGGAGAGACTTCTCACCCAATGAAGGATGAGGTTATAGGTTTAATGAGGGAGTTAGACGCAGAGATGAGGAAAAGGGGTTATGCTCCTGATACCAGCTCAGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACATTTCTGGCATAGTGAGAGGTTGGCTGTGGCTTATGGGCTTCTTAAGGCTGTTCCAGGGACCTATTATACGTATAGTGAAACTTCGTGTTTGTGGAGATTGTCATACTGTTCTGAAACCCATCAGCATTATAACAAATAG 1578 0.4753 MSVVQSLQSQLCTVARLSPLVAKKLHAQIIKYGLNQHQPIPNTLLDAYGKCGLIEEALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLATGLHHPDHFVFASLVKVCANLGAPHLKQGKQVHARFFLSPFSHDDVVKSSLIDMYAKFGMPHYGRAVFDSISSLNSISWTAMISGYARRGRNVVGACANLALWKLGKQMHGVVTTLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVTWTLIIAGTAQHGQAEEALALYDEMVLAGIKPNEVTYVGLLHACSHAGLVSKGRALSGPWLKTMELHPLCITILVCWIFLVDQGTLMRLKISLEQCQSTPMNLLGLLCSVLRHGNTQMAVRIADLLLNLKPEDPSSYILLSNVYAGAGMWEDVSKVRKLMMVMEVKKEPVALTWERKDMFYAGETSHPMKDEVIGLMRELDAEMRKRGYAPDTSSVLHDMDQQEKERQHFWHSERLAVAYGLLKAVPGTYYTYSETSCLWRLSYCSETHQHYNK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1815 525 Pfam PPR repeat family 248 296 IPR002885 -
Aed7g1815 525 PANTHER OS11G0661000 PROTEIN 189 502 - -
Aed7g1815 525 PANTHER OS11G0661000 PROTEIN 16 189 - -
Aed7g1815 525 Pfam PPR repeat 42 66 IPR002885 -
Aed7g1815 525 Pfam PPR repeat 174 188 IPR002885 -
Aed7g1815 525 Pfam DYW family of nucleic acid deaminases 459 500 IPR032867 GO:0008270
Aed7g1815 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Aed7g1815 525 TIGRFAM PPR: pentatricopeptide repeat domain 251 285 IPR002885 -
Aed7g1815 525 TIGRFAM PPR: pentatricopeptide repeat domain 223 251 IPR002885 -
Aed7g1815 525 TIGRFAM PPR: pentatricopeptide repeat domain 42 64 IPR002885 -
Aed7g1815 525 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 189 502 - -
Aed7g1815 525 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 16 189 - -
Aed7g1815 525 Gene3D Tetratricopeptide repeat domain 190 306 IPR011990 GO:0005515
Aed7g1815 525 Gene3D Tetratricopeptide repeat domain 127 189 IPR011990 GO:0005515
Aed7g1815 525 Gene3D Tetratricopeptide repeat domain 10 126 IPR011990 GO:0005515
Aed7g1815 525 Pfam E motif 364 420 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1815 Aed-Chr7 21545447 21547281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1815 6 494 Glycoside Hydrolase AT3G49170 31.086 6.61e-71 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1815 - - gmx:100782048 739.184