Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1812 ATGAATGGCCTTTTTGTTGTCCTTCTAATCTCTGCCATTGCTTCACCTAGCTTGTGTGCTAGAGTAAGTCTTGAGGCAAGTCCAACAATCTTCAATGTTGTTAGCTACGGTGCCGGTGGTGATGGCAAAACTGATGATTCACAGGCTTTTGTGAAAGCATGGGAAGCCCTCTGTTCTTCAACTCAGCAGTCTGCAAGACTTTACATACCCGAAACGAAAACATTCATGTTGCAACCTGTGTCGTTTGAGGGTCCTTGCAAACCAACAGCCATTAACGTTCAGGTTGAGGGGACTATCATTGCCCCCAAAAGCATTCGCGCTTGGAGATGGCAAAATGGAAAAAGTAAATGGATCCAATTCTCGAACGTAGATGGCCTTGTAGTTAATGGAAAAGGAAAAATTGATGGCCAAGGTGATGCATGGTGGAATAATGTCTCTGACAGGCCCACTGCTCTCCACTTCCATAACTGTGGAAATCTAAGACTTATGGAGACGACTCACATCAACAGTCCCAGAAATCATATAAGCATAGATACGTGCAATGGCGCACAAATCTCCAATATTCATATTTTTGCACCAAAGGACAGTCCAAACACCGATGGCATTGATATCTCAGGATCATCCAACATCTTAATACAGCATTCCACCATTCAAACTGGTGATGACTGCATTGCTATTAATTCCGGTTCTTCCTTCATCAACATAACTGATATTAACTGTGGACCTGGCCACGGCATCAGTGTTGGGAGCCTCGGACGTAATGGAGATTATGCTAAAGTTGAAGAGGTACATGTGAGGAATTGCACCTTCAATGGATCTGATAATGGAGTCAGAATCAAGACATGGATGGGAGGATCCGGTTATGCTAGGAAGATCACATTTGAAGATATTATAGTTGTTGGGGTTAAGTACCCTGTGATTATTAACCAACAATACGTTGCGTTTCTTAGCCAAAGGCAAGCAGTGAAAATAAGCGATGTTACTTACCGCAACGTGAGGGGAACTTCAAGTTTGGAGGATTCAGTGGTACTGAAATGTGATCCCTCTGTAGGCTGCACCAACATTGTGTTGGACGAAATTCGCATAACCACTGAAGATGGCAAAAAAACACAAGTATCTTGCGACAATGCACGAGGCATTTCCTCCAACTGTGATCCAACAATTGGTCGTTGTCTTTCTAAAAATTAA 1188 0.4301 MNGLFVVLLISAIASPSLCARVSLEASPTIFNVVSYGAGGDGKTDDSQAFVKAWEALCSSTQQSARLYIPETKTFMLQPVSFEGPCKPTAINVQVEGTIIAPKSIRAWRWQNGKSKWIQFSNVDGLVVNGKGKIDGQGDAWWNNVSDRPTALHFHNCGNLRLMETTHINSPRNHISIDTCNGAQISNIHIFAPKDSPNTDGIDISGSSNILIQHSTIQTGDDCIAINSGSSFINITDINCGPGHGISVGSLGRNGDYAKVEEVHVRNCTFNGSDNGVRIKTWMGGSGYARKITFEDIIVVGVKYPVIINQQYVAFLSQRQAVKISDVTYRNVRGTSSLEDSVVLKCDPSVGCTNIVLDEIRITTEDGKKTQVSCDNARGISSNCDPTIGRCLSKN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1812 395 SMART pbh1 207 228 IPR006626 -
Aed7g1812 395 SMART pbh1 260 281 IPR006626 -
Aed7g1812 395 SMART pbh1 289 310 IPR006626 -
Aed7g1812 395 SMART pbh1 319 346 IPR006626 -
Aed7g1812 395 SMART pbh1 180 206 IPR006626 -
Aed7g1812 395 PANTHER - 17 388 - -
Aed7g1812 395 SUPERFAMILY Pectin lyase-like 21 388 IPR011050 -
Aed7g1812 395 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Aed7g1812 395 PANTHER - 17 388 - -
Aed7g1812 395 Pfam Glycosyl hydrolases family 28 58 378 IPR000743 GO:0004650|GO:0005975
Aed7g1812 395 Gene3D - 15 390 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1812 Aed-Chr7 21529581 21531426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1812 30 395 Glycoside Hydrolase AT5G27530 50.674 1.26e-126 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1812 K01184 - jre:108997191 426.017