Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1809 ATGAGTACCGTTGACAAAATGTTGATCAAGGGCATCCGGAGCTTCGACCCGGAGAACAAAAACGTAATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGCGCCAACGGTGCTGGCAAGACCACCATCATCGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCTCCGAACGCCAGGTCCGGTCACAGCTTCATCCACGACCCAAAGGTCGCAGGGGAAACCGAAACCAAGGGACAGATTAAGCTCCGCTTCAAAACTGCGGCGGGCAAAGACGTCGTTTGCGTAAGGTCCTTCCAGCTGACGCAGAAGGCCTCGAAGATGGAGTATAAGGCAATTGAGAGCGTGCTTCAGACCATTAATCCCCATACTGGCGACAAAGTTTGCCTCAGCTATCGATGTGCTGACATGGACCGAGAGATTCCCGCGCTCATGGGCGTTTCCAAAGCCATTCTCGAAAATGTTATATTCGTTCACCAGGATGAAGCCAATTGGCCACTCCAGGATCCTTCCACCTTAAAGAAAAAGTTCGACGATATCTTCTCCGCCACCAGGTACACCAAGGCACTCGAAGTTATAAAAAAACTTCACAAGGACCAGGCTCAAGAGATCAAGACTTACAAGCTCAAACTGGAAAATCTTCAGACTCTAAAAGATGCTGCTTACAAGCTTCGGGAAAACATTGCACATGATCAAGAGAAAACAGAGTCTGTCAAATCTCAAATACAACAGTTGGATGGGAGCATTCACGAATTGGATGTTAAACTTCAGCACACCGGTGAAACATTGAAAGATTTGCGGAAGCTGCAAGAGCAGATATCAACTAAAACTGCTCAACGAAGCACCCTTTATAAGGAAGAACAGAGACAATATGCTGCTCTCACGGAGGAGATTGTAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAAGTTCAGAAACTAAAATAAGCAGGCTTGAAAGAGAAATGGTGGACATTGACTTTTCAAGTAAATCCCTTAAGGAGACCATTGATGAATCCATCAAATATATTGCCAAGCTAGAAGCTGAAGCAGAAGCTCACATGTCATTGAAGAATGAACGTGATTCCTCCATTCATAATCTTTTCACTATATATAACTTGGGATCTCTTCCAAAGTCACCTTTCAGTGCTGAGGGTGCTGTAAACCTCACTAATCGTGTAAAATTAAGGTTGGCAGATCTTGAGAAGGATCTGGATGATAAAAAGAAAGCAAATGACAATGAAATCAAGATGGCATTTGATTGCTACATGAATGCAAATGACCATTTGAAACATACTGAGGCTAAAATAAAGGCTATGACAGGGAACAAGAGTGGCATTTTGAAGCGCATTGAAGAGAAGAAAAATGAGCTTTATTCTCTTGAATTTAAAATATCTAATGAAAATTTCTCTCGATTAGATGACAGAGAAAGAAATTTGGATAATGAGGTTAAGAGGAAGACAAGGCAACTTGATGAAAGACAATTTGAACCAAATAAATGTCAATTGGAAAAGGACATATATAGTGTAGATCAAAAGATTAAGGCTGTCAATCGAGAGAAGGATATAATGGTTTCTGATTCAGAGGGCAGAGTTAAGCTATCTTATAAGAAGGCAGAGTTGGAAAATCAGAAGAAGAAACATAAAAAGATAATTGATGAACAAAAGGACATAATAAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAGAAGGAAATTACACAAGCATTAGGGGTCATTGAAGCTGAATTTAATGACCTGGATGCTAAGTTCCGTGAAGCTGAGAAGGAAGTCAATATGTTGCAGGTGAAAATACAAGCAGTTAATAGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATATTCTGGAATTGATTCTTATCTTGAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATTACCAAATAAGCAAATATAATATGGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAAGCTTGCAAGAGCTACTCATGTTTGCCCTTGCTGTGATCGCCCTTTCTCTTCAGAAGAAGAAGACAGTTTTGTCAAGAAGCAAAGAGTGAAGGCTACCAGTTCAGCTGAACATATGAAAGTTCATGCTGTAGAGTCCTCAAATGCAGAGTCTCATTATCAGCAGCTGGACAAGATTCGGATGCTTTATGAAGAATATGTTAAACTTGGGAAGGAGACAATCCCTAATGCCGAAAAGGAACTTCAACAACTTAAAGAAGAGATGAATGACAAATCTCAGGCTCTTGATGATGTTTTAGGGGTTTTAGCACAAGTAAAGACTGACAAGGATTTGGCTCAGACATTGGTGCAACCTGTTGAAGAGGCTAACCGGCTTTTCCAAGAAATTCAAGCTTTGCAAAAGCTAGTTGAAGATTTAGAAGATAAGCATGATTTTCGAGCACAGGGAGTGAGGACTCTGGAAGAGATTCAATTGGAGCTTAACACATTGCAGAGCACAAAGGATAATTTGCAATCTGAATTGGATCGGTTGAAGGATGAACAGAGGCATATGGAGAATGATCGAGCAAGTGTTGAATCACGGTGGCATACTGCAAGGGAGGAGAAAATGAAGGCAATTAACATATTGGAAGGTGTTAAGAGAGTAGAAGAAGAATTGGAACGTTTAAATGAAGAAAAGATCCAAATTGATCTCAATGAGAAGCATTTGACAGATGCTCTTGGACCTTTATCCAGGGAGACAGCTAAATTACTTGCTAACCATAATGACCTGAAAATTAGACTCGAGCGTGAGTATGAGGACATGGCTGAACAAAAGAGAAGTTATCAACAAGAAGCTCAAGCACTTTTTAAAATGAATTCTAAGATCGAAGCGTATTCTGATTTAAAGAAAGAAGACAGGTTGAAGGAACTGCAGGAAAATAAATCTCAATCAGAATCTCAACTTAAAGAGTTTGATACCAGGAAGGAGAAAATTTTAGTTGAACTAGACAGTACTAAACATTTGATACAAAGTGAAGATCAATTTAAAAGAAATATTGTTGACAACTTAAATCACAGGAAAACAAAGGCTGAAGTAGATGCGCTAGCACATGAAATTGAAACACTGGAAGAAAATATATTGAAGGCTGGTAGGATTTCCACAGTTGAAACTGAACTCCAGAAACTATCGCAGGAGAGGGAGAGACTTCTTTCAGAGTTAAACAGGTGCCATGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAAGTTGATCTTAAACAGGCTCAATACAAGGACATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTGGACAGATACTACAATGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAGCAAACTTATAGAGGACAAGATATAGACTACATTAGTATTCATTCAGACTCTGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTGTCATGCAGACCGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCGTCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCACTGGACGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTAGCTGCAGCCCTCGTAAGAATAATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCTCAACTGATAGGTCAGCGCCAGCATGCTGAGAGATATTATCGTGTCGCCAAAGATGACTATCAGCACAGTATAATCGAAAGTCAGGAGATATTTGACTGA 3951 0.4047 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGANGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGDKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRENIAHDQEKTESVKSQIQQLDGSIHELDVKLQHTGETLKDLRKLQEQISTKTAQRSTLYKEEQRQYAALTEEIVDTDEELMEWKTKFEERIASSETKISRLEREMVDIDFSSKSLKETIDESIKYIAKLEAEAEAHMSLKNERDSSIHNLFTIYNLGSLPKSPFSAEGAVNLTNRVKLRLADLEKDLDDKKKANDNEIKMAFDCYMNANDHLKHTEAKIKAMTGNKSGILKRIEEKKNELYSLEFKISNENFSRLDDRERNLDNEVKRKTRQLDERQFEPNKCQLEKDIYSVDQKIKAVNREKDIMVSDSEGRVKLSYKKAELENQKKKHKKIIDEQKDIIRKVLKGRVPLDKDVKKEITQALGVIEAEFNDLDAKFREAEKEVNMLQVKIQAVNSNLSKHHKDLESRKRFIESKLQSLDQQYSGIDSYLEVLESAKEKRDYQISKYNMADGMRQMFDPFEKLARATHVCPCCDRPFSSEEEDSFVKKQRVKATSSAEHMKVHAVESSNAESHYQQLDKIRMLYEEYVKLGKETIPNAEKELQQLKEEMNDKSQALDDVLGVLAQVKTDKDLAQTLVQPVEEANRLFQEIQALQKLVEDLEDKHDFRAQGVRTLEEIQLELNTLQSTKDNLQSELDRLKDEQRHMENDRASVESRWHTAREEKMKAINILEGVKRVEEELERLNEEKIQIDLNEKHLTDALGPLSRETAKLLANHNDLKIRLEREYEDMAEQKRSYQQEAQALFKMNSKIEAYSDLKKEDRLKELQENKSQSESQLKEFDTRKEKILVELDSTKHLIQSEDQFKRNIVDNLNHRKTKAEVDALAHEIETLEENILKAGRISTVETELQKLSQERERLLSELNRCHGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDYQHSIIESQEIFD 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1809 1316 Coils Coil 398 425 - -
Aed7g1809 1316 Pfam AAA domain 7 245 IPR038729 GO:0140664
Aed7g1809 1316 Coils Coil 937 971 - -
Aed7g1809 1316 Coils Coil 545 565 - -
Aed7g1809 1316 Gene3D - 4 282 IPR027417 -
Aed7g1809 1316 Coils Coil 1038 1058 - -
Aed7g1809 1316 Coils Coil 266 329 - -
Aed7g1809 1316 Coils Coil 839 880 - -
Aed7g1809 1316 Coils Coil 980 1007 - -
Aed7g1809 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Aed7g1809 1316 PANTHER RAD50 1 1314 - -
Aed7g1809 1316 TIGRFAM rad50: rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Aed7g1809 1316 Coils Coil 808 828 - -
Aed7g1809 1316 Coils Coil 1065 1092 - -
Aed7g1809 1316 Coils Coil 891 918 - -
Aed7g1809 1316 Pfam Rad50 zinc hook motif 686 724 IPR013134 -
Aed7g1809 1316 Coils Coil 753 787 - -
Aed7g1809 1316 CDD ABC_Rad50 4 170 IPR045171 -
Aed7g1809 1316 Coils Coil 588 622 - -
Aed7g1809 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Aed7g1809 1316 Coils Coil 627 647 - -
Aed7g1809 1316 Coils Coil 197 217 - -
Aed7g1809 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Aed7g1809 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Aed7g1809 1316 Gene3D - 1025 1314 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1809 K10866 - gmx:100818545 2223.36