Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1801 ATGAAGAAGAAGAAGCAGGTGCCGGAGTGGATGAACAGTTCTCTGTGGTCCACCCCCTCCGACCACCACCGCTTTGAACCACCCTCTCCTCCTCCTGTTAGAGAAGATCTCTCGACAATCCCAACCAATCACAATGCCTCTCCTTCTTCTTCTTCTTCTTCATCAGTTTCTTCTCCTATTGAATCTGCTTCTGCTTCTGCTTTCTCCACCGCTGATGACATCTCTCGACAGGGCCAGGCTCAGTTGTTGGCCGAGTTATCTAGGAAGGTGATAGACATGCGCGAGTTGAGGAGAGTCGCTTCTCAAGGAATACCTGACACTGCTTTGCGTCCCACGCTCTGGAAGCTTTTGCTTGGATATCTGCCGCCCGATCGTTCCCTCTGGTCCTCTGAATTAGCCAAAAAGAGGTCCCAGAGGATGTACAACTCCGATGCTCATGATATCCATGATGAGACTCGCCTCTTGCTTTCTACATCACAAATCACTCATCAGGACCACGACCACCCTTTGAGTCTTGGCAATACCAGCATATGGAATCAGTTCTTCCAGGACACAGAGATCATAGAGCAGATTGACCGAGATGTAAAGCGTACTCATCCAGATATACACTTCTTCTCTGCTGATTCTCAATTTGCAAAATCTAATCAGGAGGCTTTAAAGGGCATATTAGTTATTTTTGCCAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAAGTATTGGCTCCTCTCTTCTATGTGTTAAAAAATGACCCTGATGAGGAAAATGCGGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATCCGTTCCACTATTACAAGATTGTCCCAGCTTTTAAAAAAACATGATGAAGAACTGTGGCGTCATCTTGAGGTCACTACTAAGGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACACGGGAATTCAATTTTGCTGACATCCTTCATATTTGGGACGTCATTTTAAGTGATCCAGAGGGTCCACAGGAGACACTTCTCAGAATATGCTGTGCAATGCTAATTCTCGTTCGTAGGCGCCTTCTAGCCGGTGATTTCACTTCTAACCTCAAGTTGCTGCAAAGTTATCCTTCTACAAACATTAGTCATTTGCTCCATGTAGCAAATATGTTACGTGTACAGTCAGCCTAA 1236 0.4442 MKKKKQVPEWMNSSLWSTPSDHHRFEPPSPPPVREDLSTIPTNHNASPSSSSSSSVSSPIESASASAFSTADDISRQGQAQLLAELSRKVIDMRELRRVASQGIPDTALRPTLWKLLLGYLPPDRSLWSSELAKKRSQRMYNSDAHDIHDETRLLLSTSQITHQDHDHPLSLGNTSIWNQFFQDTEIIEQIDRDVKRTHPDIHFFSADSQFAKSNQEALKGILVIFAKLNPGIRYVQGMNEVLAPLFYVLKNDPDEENAAFAEADTFFCFVELLSGFQDNFCQQLDNSIVGIRSTITRLSQLLKKHDEELWRHLEVTTKVNPQFYAFRWITLLLTREFNFADILHIWDVILSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANMLRVQSA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1801 411 Gene3D - 290 411 - -
Aed7g1801 411 ProSiteProfiles TBC/rab GAP domain profile. 104 354 IPR000195 -
Aed7g1801 411 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 145 - -
Aed7g1801 411 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 150 409 - -
Aed7g1801 411 Pfam Rab-GTPase-TBC domain 108 375 IPR000195 -
Aed7g1801 411 SMART tbc_4 100 380 IPR000195 -
Aed7g1801 411 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 4 145 - -
Aed7g1801 411 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 150 409 - -
Aed7g1801 411 MobiDBLite consensus disorder prediction 1 59 - -
Aed7g1801 411 MobiDBLite consensus disorder prediction 36 59 - -
Aed7g1801 411 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 291 408 IPR035969 -
Aed7g1801 411 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 85 313 IPR035969 -
Aed7g1801 411 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 173 282 - -
Aed7g1801 411 Gene3D - 77 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1801 Aed-Chr7 21430748 21435420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1801 K24796 - gmx:100778830 668.692