Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1796 ATGTGCACGGTTTCAAGCTCAATCCTTGTGGGACTGGGATGGCCTTCTTCTTCTTCTTCTTCGCTATTGTTCCTTTCTTGTTATCCCAAAACGAGAAGGAGATTTGGCAATGTCATAACTTGTGGTATATCCGTAGCAGCGACGGGTATGACTAAAGATGTGTGGACCCGAACATCCTCTCCCAACAACAACAGCAGGCAACGTAGTACGAAGCAGCAGCAAGGTGCGTACTTGGACCGCAGCGTGGACATGGAAGAGCTATTAGCGGCAATTGGACAGACCCACAACGAGGATGAACTGTCTGCGGTTATGTCTCCCTACACCGGGAGGCAGCTATCTATACGATTCATGGTTTCCCTGCTCTCCCGCGAGCCCGATTGGCAACGCGCTCTCGCCCTTCTCGACTGGATCAACGACAAGGCCATCTACTCCCCTTCCCTCTTCGCCTACAACGTCGTTCTCCGCAACGTGCTTAGAGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGATGAAATGCGCCAGAAGGGTCTTTCCCCCGATAGGTACACTTACTCCACCCTCATTACTTCTTTCGGCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTCTCCGGCGACCTCGTCCTCTACAGTAACTTGATCGAGCTCGCTCGCAAGCTCTGCGACTACTCCAAGGCAATTTCCATCTTCACCAGATTGAAAGCCTCCGCTATTGTCCCCGACCTTATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGCGAGGCTCGCCTTCTGCTTCAGGAGATGAGGGACAATGCTGTTCAACCTGACACCGTCAGCTACTCCACGCTTCTTGCCATCTTTGTTGACAACCAGAAGTTTGTTGAAGCCCTCTCGTTATTCTCCGAAATGAATGAAGCCAAATGCCCTCTTGATCTCACCACATGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCTGACCGTCTCTTCTGGAGCATAAGGAAACTGGGGATTCAACCCAACGTGGTTAGCTACAACACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTCGGGGAAGCCATCCATCTCTTCCGTTTGATGCAGACTAAGGATGTACAACAGAATGTCATCACCTACAACACTATGATTAATATTTATGGCAAGACTCTTGAGCACGAGAAGGCTACCAATCTCATTCAAGAGATGAAGAAAAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATTATTTCTATATGGGAGAAGGCAGGGAAACTGGACCGGGCTGCCATCTTGTTTCAGAAGTTAAGGAGTTCAGGAGTTCGGATTGATGAGGTTCTTTACCAGACAATGATTGTGGCCTATGAGAGGGCGGGTTTAGTTGCTCACGCGAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGACACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTGGAGAGGTCAAAGATATATCTGTGTTTGGGTGCATGATTAATCTCTTCTCTAAGAACAAAAAGTATGGCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAGTTTGATAGAGCAGATGCTTTATATAGACAGATGCACGAAGAAGGATGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCTTGATGATAGAGTCACTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAGGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCTTCCCGAATCATGAATAGGATGAATCAAAAAGCAATCAGAAGTCACGATCATGCTTAA 2013 0.4694 MCTVSSSILVGLGWPSSSSSSLLFLSCYPKTRRRFGNVITCGISVAATGMTKDVWTRTSSPNNNSRQRSTKQQQGAYLDRSVDMEELLAAIGQTHNEDELSAVMSPYTGRQLSIRFMVSLLSREPDWQRALALLDWINDKAIYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIELARKLCDYSKAISIFTRLKASAIVPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIFVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSIRKLGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQTKDVQQNVITYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIAILARAGRIEEATWVFRQAFDAGEVKDISVFGCMINLFSKNKKYGNVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDRADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFLMIESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMNQKAIRSHDHA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Aed7g1796 670 Pfam PPR repeat family 391 435 IPR002885 -
Aed7g1796 670 Pfam PPR repeat family 145 192 IPR002885 -
Aed7g1796 670 Pfam PPR repeat family 321 365 IPR002885 -
Aed7g1796 670 Pfam PPR repeat family 250 294 IPR002885 -
Aed7g1796 670 MobiDBLite consensus disorder prediction 55 75 - -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Aed7g1796 670 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 41 663 - -
Aed7g1796 670 Gene3D Tetratricopeptide repeat domain 492 669 IPR011990 GO:0005515
Aed7g1796 670 Gene3D Tetratricopeptide repeat domain 91 228 IPR011990 GO:0005515
Aed7g1796 670 Pfam PPR repeat 569 594 IPR002885 -
Aed7g1796 670 Pfam PPR repeat 530 558 IPR002885 -
Aed7g1796 670 Pfam PPR repeat 463 490 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Aed7g1796 670 SUPERFAMILY HCP-like 204 423 - -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 393 427 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 530 562 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 358 389 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 569 598 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 149 181 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Aed7g1796 670 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Aed7g1796 670 Gene3D Tetratricopeptide repeat domain 349 419 IPR011990 GO:0005515
Aed7g1796 670 Gene3D Tetratricopeptide repeat domain 420 491 IPR011990 GO:0005515
Aed7g1796 670 Gene3D Tetratricopeptide repeat domain 229 348 IPR011990 GO:0005515
Aed7g1796 670 PANTHER OS03G0856100 PROTEIN 41 663 - -
Aed7g1796 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1796 149 613 Glycosyltransferase AT1G05670 24.364 4.07e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1796 - - gmx:100782934 1183.7