Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1647 ATGAGGCGCATGGCGATAGGAGCAGTCACAAACTCCACTCTTGTTCTTCTTCTTCCCACCTCTATACCCAATCACTTAACTATCCCAATCTCATTCTCTCTCACCAAAACGCCGCCGTTTCCCATCTCCGTTCTCACTCACCCACGCCGCTTCCTCTCTGCTTCTGCTCTAACCGCCGACCACCACCACAACCTCTCTGATTTCGGAGATGGTGACAGCGTTGCGATTTCCAGCGATGTTTCGAAGACGCTTCTTAAAGGGATGACTTACCCTGAATTCGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCTATGATGCTGTGGAAGCGAATGTATGGAAACAACATTTGGGCCCATCATATTCATGAGTTGGAAGGTTTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCTGAGTTCAAAGTGCTTGCTCTGAAAGAAATTCGCATAGCATCTGATGGAACAAGAAAGATTTTATTCACATTAGATGATGGGCTGGTCATAGAAACAGTTGTTATACCTTGTGACAGAGGTAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGGCAAGCCTTCTTTTCCCAAATGGGTCTTAGGAGACATCTTACTTCTGCAGAAATAGTAGAGCAGGCTGTTTTTGCCAGACGGCTGCTCACAGATGAAGTTGGTTCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCAGCAGATATAATGGTGGATGATCAAGGGCTTCATTTCAGTCCCCGCAAGGTCACCATTTCAACCAGTGGGCTTGTTCCACAACTCAAACGTTTCCTCCGTGAATCGAACTGTACATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTACAAGCTGGACTTGCTTCTTCAGACACTTCGAGAGGAGCTTTCCTTGAAAAACAACTACAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGTGATCAAGATGCAGAGAGGCTTATTGAGCTCGTGAAGGGCATTCCTTGCAAGATTAATCTAATTTCATTCAATCCGCACAGTGGATCATTCTTCAAACCAACCAAAGATGAAAGGATGATCGAATTCCGAAATACTTTGGCTAGGGCAGGAGTGGTGGTTTTGTTAAGACTTAGTAGAGGTGATGATCAAATGGCTGCGTGTGGACAATTGGGTAAGCCTGGCACCATTCAAGCTCCATTGCTTCGTGTGCCAGAGCAATTCCAAATGACAATTGAAAGTTTAACTTGA 1359 0.4327 MRRMAIGAVTNSTLVLLLPTSIPNHLTIPISFSLTKTPPFPISVLTHPRRFLSASALTADHHHNLSDFGDGDSVAISSDVSKTLLKGMTYPEFEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIHELEGLNKDFKKMLNENAEFKVLALKEIRIASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRQAFFSQMGLRRHLTSAEIVEQAVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDDQGLHFSPRKVTISTSGLVPQLKRFLRESNCTLAVSLNATTDEVRNWIMPINRKYKLDLLLQTLREELSLKNNYKVLFEYVMLEGINDSDQDAERLIELVKGIPCKINLISFNPHSGSFFKPTKDERMIEFRNTLARAGVVVLLRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQMTIESLT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1647 452 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 84 428 IPR027492 GO:0030488|GO:0070475
Aed7g1647 452 Gene3D Aldolase class I 146 433 IPR013785 -
Aed7g1647 452 SFLD adenosine C2 methyltransferase (RlmN-like) 81 429 IPR004383 GO:0006364|GO:0008173
Aed7g1647 452 SFLD Radical SAM 81 429 IPR007197 GO:0003824|GO:0051536
Aed7g1647 452 Gene3D - 82 145 - -
Aed7g1647 452 ProSiteProfiles Radical SAM core domain profile. 180 419 IPR007197 GO:0003824|GO:0051536
Aed7g1647 452 PANTHER 23S RRNA METHYLTRANSFERASE 64 435 IPR040072 -
Aed7g1647 452 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 82 433 IPR027492 GO:0030488|GO:0070475
Aed7g1647 452 CDD Radical_SAM 193 386 - -
Aed7g1647 452 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 64 435 - -
Aed7g1647 452 Pfam Radical SAM superfamily 189 361 IPR007197 GO:0003824|GO:0051536
Aed7g1647 452 Pfam 4Fe-4S single cluster domain 193 303 - -
Aed7g1647 452 SUPERFAMILY Radical SAM enzymes 182 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1647 Aed-Chr7 19756759 19763677 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1647 K06941 - gmx:100813692 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1647 7 19756759 19763677 Aed7g1647 7 19756759 19763677 ECH