Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1628 ATGAGTGGCTTGAGTTTCAAGGGCTTCACATGCATGCTCCTCATTGCATTTCTCATTTGGTCCTTCAATTTTGAACCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCAAAGCAGCAAGGATGTCTCAGCTTCTTCCATGTACAAGAAAAAAGGCAAAAACTATAGCAATGGTCACAACAACAAGCACCATGGTGGTGGAGGAGGATCAAAGCCAAAGCCTCCATCATCATCACACAGTAAAGGCACACCAACATTACCAAAGCCTCCACCACATAATAACAAAAACACTCCATCACCACCACCATATCCTCCACCACCACCACCAAGTGATGATGCCCCCACAACTCCACCACCAAAATCTTACAATGGTGGTGGCCACTCTTCCACCACCACCTTCAATGTGATGGATTTTGGAGCCAAGGGAGATGGAAAATCAGATGACACCAAGGCATTTCAAGGGGCTTGGGCTGAAGCATGTAAAGTGGAATCATCAACCATGCTTGTCCCAGCAGACTACGTCTTCTTTGTGGGGCCCATTTCATTCTCCGGCCCATACTGTAAGCCCAACATCGTTTTCCAGCTTGATGGCACCATTGTTGCACCAACAAGCCCCAATGCTTGGGGCAAAGGGCTTCTACAGTGGTTGGAATTTTCCAAGTTGGTGGGAATTACAATCCAAGGAAATGGCATCATTGATGGAAGAGGCTCAGTGTGGTGGCAAGACAGCCAGTATGATGATCCTATAGATAATGAGGAAAAGCTCATTATTCAAAGTGAGATGGGAGGAAGAATGCCATCAGTAAAGCCAACTGCATTGCGGTTCTATGGGAGCTTTACTCCAACAGTTACAGGCATAACAATTCAAAATAGTCCACAGTGCCACCTCAAGTTTGACAACTGTAATGGGGTCATGGTCCATGATGTTACCATATCATCTCCTTCTAACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTGATCTACAGCAGCTCCATGGCCTGCGGAGATGACTGCATTTCAATACAAACTGGATGCTCAAATGTGTATGTTCACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATTCACAACACAATGACTGCAGCTGTGTCTCTTGCCGGAATCAACTATGAAAGGATAAGGGGGACGTACACGGTTAAGCCGGTTCACTTTGCCTGCAGTGATAGCCTACCTTGTGTGGATGTTTCTCTAACCTCAGTTGAGTTAAAGCCAATTCAAGAAAAATACCATATAGACAGTCCTTTCTGCTGGGAGGCTTATGGTGAACTGAAAACTCCAACAGTTCCACCAATTGATTGTCTGCAAATTGGGAAGCCGACGAACAATCGGATTCAGACAGATCATGATTTGTGTTGA 1464 0.4556 MSGLSFKGFTCMLLIAFLIWSFNFEPCIARRGKHWRQSSKDVSASSMYKKKGKNYSNGHNNKHHGGGGGSKPKPPSSSHSKGTPTLPKPPPHNNKNTPSPPPYPPPPPPSDDAPTTPPPKSYNGGGHSSTTTFNVMDFGAKGDGKSDDTKAFQGAWAEACKVESSTMLVPADYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTSPNAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDSQYDDPIDNEEKLIIQSEMGGRMPSVKPTALRFYGSFTPTVTGITIQNSPQCHLKFDNCNGVMVHDVTISSPSNSPNTDGIHLQNSKDVLIYSSSMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHNTMTAAVSLAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSVELKPIQEKYHIDSPFCWEAYGELKTPTVPPIDCLQIGKPTNNRIQTDHDLC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1628 487 MobiDBLite consensus disorder prediction 121 135 - -
Aed7g1628 487 Pfam Glycosyl hydrolases family 28 163 396 IPR000743 GO:0004650|GO:0005975
Aed7g1628 487 Gene3D - 123 470 IPR012334 -
Aed7g1628 487 SMART pbh1 351 371 IPR006626 -
Aed7g1628 487 SMART pbh1 381 403 IPR006626 -
Aed7g1628 487 SMART pbh1 301 327 IPR006626 -
Aed7g1628 487 SMART pbh1 328 349 IPR006626 -
Aed7g1628 487 SMART pbh1 221 242 IPR006626 -
Aed7g1628 487 MobiDBLite consensus disorder prediction 32 135 - -
Aed7g1628 487 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 396 477 - -
Aed7g1628 487 MobiDBLite consensus disorder prediction 84 116 - -
Aed7g1628 487 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 396 - -
Aed7g1628 487 MobiDBLite consensus disorder prediction 39 63 - -
Aed7g1628 487 SUPERFAMILY Pectin lyase-like 130 486 IPR011050 -
Aed7g1628 487 PANTHER - 396 477 - -
Aed7g1628 487 PANTHER - 6 396 - -
Aed7g1628 487 ProSitePatterns Polygalacturonase active site. 358 371 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1628 Aed-Chr7 19523135 19528554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1628 4 487 Glycoside Hydrolase AT1G60590 55.128 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1628 - - gmx:100783813 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1628 7 19523135 19528554 Aed7g1628 7 19523135 19528554 ECH