Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1627 ATGGACAAATTCTTCTTGGTTTCCTTACTCGTTGCTTTGCTCATAGCAGCTCATGGAGTTGCAGGAAGCATGATGTTTGACAACATTGACATGCTCGAGGAACTCAAAAGCCTGGAGGCCCTGGACATAGAAGACGAAAATGAGGTAGAACTTTCTGACATCCCTTCATGGAGAAGTGAGCACGGTGGAAAAGTTCTTGTGAATATTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGTCTTTGCAAAAAGCATGGGGAGTTGCATGCTCTACATCAAAATCTGTTTTGTTAATCCCTCAAGGACGTCGTTACCTAGTTAATGCAACAAAATTCAAAGGGCCTTGTGCAGACAAGCTCATCATCCAGCCTTGCAAAGGTGCACCAACAGCGTTTACTATTGATACAAGTTCATCCATAAGGGTGAAAGGACTAACAATCCAGAATAGCCAACAGATGCATTTTACCATATCACGATGTGATTCTGTTAGAATTACTGGCGTGAAAGTTTCAGCACCTGGAGACAGCCCAAACACTGATGGAATCCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATAAGCATTGGAAGTCTTGGGAAAGACAACTCAACAGGCATAGTCACGAAAGTGATTTTGGATACAGCAATTCTTAGGGAGACTACCAACGGTCTCAGAATTAAGACTTGGCAGGGAGGTGCTGGATATGTTCGAGGGGTACGTTTTCAGAATGTGAGGGTGGAAAATGTATCCAACCCCATTATTATAGATCAATTTTACTGTGATTCACCTTCCAGTTGTCAAAACCAGACATCAGCAGTGGAGATAAGCGAAGTGATGTATCAGAACATAAGTGGCACCACAATGAGTGGCAAGGCCATTAAATTTGACTGCAGTGACTCAGTCCCATGCAGCAAACTAGTCCTTAGCAATGTGGACTTAGAGAAACAAGATGGCTCTGTTGAAACATATTGCCACTCAGCTCAAGGCTTCCCCTATGGGGTGGTGCACCCTTCTGCTGATTGCCTCAGTTCTAGCGACAAAACCTCTCACATTGAAGAAACAACTACAGAGGATGAAGATATCATTCGCCACAGTGAACTATAA 1215 0.4255 MDKFFLVSLLVALLIAAHGVAGSMMFDNIDMLEELKSLEALDIEDENEVELSDIPSWRSEHGGKVLVNIDSFGAAGDGESDDTESLQKAWGVACSTSKSVLLIPQGRRYLVNATKFKGPCADKLIIQPCKGAPTAFTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRITGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAILRETTNGLRIKTWQGGAGYVRGVRFQNVRVENVSNPIIIDQFYCDSPSSCQNQTSAVEISEVMYQNISGTTMSGKAIKFDCSDSVPCSKLVLSNVDLEKQDGSVETYCHSAQGFPYGVVHPSADCLSSSDKTSHIEETTTEDEDIIRHSEL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1627 404 MobiDBLite consensus disorder prediction 381 404 - -
Aed7g1627 404 PANTHER BNAA08G20470D PROTEIN 128 389 - -
Aed7g1627 404 ProSitePatterns Polygalacturonase active site. 221 234 IPR000743 GO:0004650|GO:0005975
Aed7g1627 404 PANTHER - 2 127 - -
Aed7g1627 404 Pfam Glycosyl hydrolases family 28 120 361 IPR000743 GO:0004650|GO:0005975
Aed7g1627 404 Gene3D - 128 403 IPR012334 -
Aed7g1627 404 Gene3D - 56 127 IPR012334 -
Aed7g1627 404 PANTHER BNAA08G20470D PROTEIN 2 127 - -
Aed7g1627 404 MobiDBLite consensus disorder prediction 383 404 - -
Aed7g1627 404 PANTHER - 128 389 - -
Aed7g1627 404 SMART pbh1 214 234 IPR006626 -
Aed7g1627 404 SMART pbh1 273 294 IPR006626 -
Aed7g1627 404 SMART pbh1 191 212 IPR006626 -
Aed7g1627 404 SMART pbh1 164 190 IPR006626 -
Aed7g1627 404 SUPERFAMILY Pectin lyase-like 65 380 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1627 Aed-Chr7 19503039 19506810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1627 24 404 Glycoside Hydrolase AT1G23460 55.936 9.07e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1627 - - gmx:100806068 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1627 7 19503039 19506810 Aed7g1627 7 19503039 19506810 ECH