Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0738 ATGTGGGGCATGAAATATCTGAATTTCTGTTATCTCTACTTTGGAACTCTAGATAATGATTTGCTCCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGGCACTTATTCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTCCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGCACGAGAAGATGAGTTTTCTTTCTCTTTATCACAAACTTCTCTATTTATTCTCCTTTCTCTCTCTCTCTTCTCTTTCTCTATGCTGTCTGCTGTCGGCAACTCTCTGGATGCACAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCGGATGTGCTACATCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAAACCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAGGGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGGGACTTCACAAATCCTAATCTGCCTACAGAGCAGAAAGGTCGACCTTCACAACCTGGATATGGTGATGCTGGAGGCATGTATTCTGGAGCCAGGGCAGGTGGATTCTCACCGATGGCCAATGCTGCAGCAATTACAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAATTCTTGTCGCAAATCTCAATCCTGATAGAATAGATGAGGATAAAATGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAACAAGCCAGATCATGCACTTATCCAGATGGGGGATGGATTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGAGCCATGTTGTTTGGGAAGCGATTGGAGGTCAACTATTCAAAGCATGCAAACATAACCCAAGGTGCTGATACACATGAGTACGTCAATTCAAATCTCAATCGATTCAATCGTAATGCTGCTAAGAACTATCGGTATTGCTGCTCACCAACAAAAATGATCCACTTGTCCACTCTCCCGCAAGACATAACCGAGGAGGAGATTGTAAGCCTTTTGGAGGAGCATGGAACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAACAGTCACTTGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGTCCACTTTCTGGGTCGGTTGTTCGCATCTCCTTTTCCCAGTTGCAGAATATATGA 1419 0.4228 MWGMKYLNFCYLYFGTLDNDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEFSFSLSQTSLFILLSLSLFSFSMLSAVGNSLDAQPNRILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQTRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGGMYSGARAGGFSPMANAAAITAAFGGGLPPGITGTNERCTILVANLNPDRIDEDKMFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHANITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSKVFEMNGKKQSLVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0738 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 400 461 IPR000504 GO:0003723
Aed7g0738 472 Gene3D - 282 377 IPR012677 -
Aed7g0738 472 SMART rrm1_1 396 465 IPR000504 GO:0003723
Aed7g0738 472 SMART rrm1_1 286 355 IPR000504 GO:0003723
Aed7g0738 472 SMART rrm1_1 6 75 IPR000504 GO:0003723
Aed7g0738 472 SMART rrm1_1 134 203 IPR000504 GO:0003723
Aed7g0738 472 SUPERFAMILY RNA-binding domain, RBD 130 230 IPR035979 GO:0003676
Aed7g0738 472 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 18 471 - -
Aed7g0738 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 395 469 IPR000504 GO:0003723
Aed7g0738 472 SUPERFAMILY RNA-binding domain, RBD 15 89 IPR035979 GO:0003676
Aed7g0738 472 Pfam RRM-like domain 125 207 IPR021790 -
Aed7g0738 472 MobiDBLite consensus disorder prediction 219 245 - -
Aed7g0738 472 Gene3D - 380 472 IPR012677 -
Aed7g0738 472 Gene3D - 6 101 IPR012677 -
Aed7g0738 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 359 IPR000504 GO:0003723
Aed7g0738 472 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 17 468 IPR006536 GO:0003723|GO:0005634|GO:0006397
Aed7g0738 472 MobiDBLite consensus disorder prediction 219 235 - -
Aed7g0738 472 SUPERFAMILY RNA-binding domain, RBD 283 468 IPR035979 GO:0003676
Aed7g0738 472 CDD RRM4_PTBPH3 388 466 - -
Aed7g0738 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 97 - -
Aed7g0738 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 370 - -
Aed7g0738 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 79 IPR000504 GO:0003723
Aed7g0738 472 CDD RRM3_PTBPH3 284 359 IPR034797 -
Aed7g0738 472 Gene3D - 130 234 IPR012677 -
Aed7g0738 472 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 18 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0738 Aed-Chr7 5583925 5594965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0738 K14948 - gmx:100791570 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0738 7 5583925 5594965 Aed1g2365 1 19708126 19715796 PCT