Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0682 ATGAAGTTTCGTGATATTGCATCATGGACTTCATTGATATCTGCCTATGGTATGACTGGAAAAGCCTATAACGCTGTGGCACTCTTCACTGAAATCCAAAATTCAGGTCAAAGTCCAGATTCTATTGCCTTTCTCGCAATCCTCTCAGCTTGTAGCCATTCGGGGTTACTCAATGAAGGGAAGTTTTACTTTAAGCAAATGACAGATGACTACAAAATAACACCAACAATTAAACACTACACTTGTTTGGTGGATCTTTTAGGACGATCTGGACGAGTGGACAACGCCTATAATTTCATCAAACAGATGCCAATGGAGCCTAATGAAAGAGTTTGGGAGGCACTGCTTAGCTCGTGCCAGGTGTACTCCAACATGGACATTGTGATTTCAGCTGCTGACAAACTACTTCAATTGTCTCTTGAGGAATCAGGCTACTATGTGTTGTTATCCAACATTTATGCAAAGGCTGGTAGATGGACAGAAAAAACAGCTATTTGGTCATTAATGAAGAGACGAAGAATTCAGAAAATGCCCGGAATCAGCAATGTTGAGCTGAATAACCAGGTCCACACCTTTCTTGCAGGTGACACACACCACCCACAATCAAAGGAGATATATGAAGGGTTAAATGTGTTGGTGGGGAAAATGAAAGAGTTAGGTTATGTCCCTGAGACTGATTCTGCTCTTCATGATGTGGAGGAGGAGGATAAAGAATGCCATCTAGCTGTTCACAGTGAGGAAATCACCAAAAACCTACGTATTTGTGGAGATTGTCATATTGCTTCCAAGCTTATCTCCAAGATTGTTCAACATGAAATTGTCATCAGGGACACCAATAGGTTCCACCATTTTAAGGATGGTATATGCTCTTGTGGTGATTATTGGTGA 888 0.4122 MKFRDIASWTSLISAYGMTGKAYNAVALFTEIQNSGQSPDSIAFLAILSACSHSGLLNEGKFYFKQMTDDYKITPTIKHYTCLVDLLGRSGRVDNAYNFIKQMPMEPNERVWEALLSSCQVYSNMDIVISAADKLLQLSLEESGYYVLLSNIYAKAGRWTEKTAIWSLMKRRRIQKMPGISNVELNNQVHTFLAGDTHHPQSKEIYEGLNVLVGKMKELGYVPETDSALHDVEEEDKECHLAVHSEEITKNLRICGDCHIASKLISKIVQHEIVIRDTNRFHHFKDGICSCGDYW 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0682 295 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 289 - -
Aed7g0682 295 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Aed7g0682 295 Pfam E motif 122 184 IPR046848 -
Aed7g0682 295 Pfam E+ motif 189 212 IPR046849 -
Aed7g0682 295 Pfam DYW family of nucleic acid deaminases 220 295 IPR032867 GO:0008270
Aed7g0682 295 TIGRFAM PPR: pentatricopeptide repeat domain 8 40 IPR002885 -
Aed7g0682 295 Pfam PPR repeat 8 36 IPR002885 -
Aed7g0682 295 Pfam PPR repeat 79 104 IPR002885 -
Aed7g0682 295 Pfam PPR repeat 44 68 IPR002885 -
Aed7g0682 295 Gene3D Tetratricopeptide repeat domain 2 189 IPR011990 GO:0005515
Aed7g0682 295 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0682 Aed-Chr7 5058399 5059334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0682 1 295 Glycoside Hydrolase AT3G49170 43.671 1.85e-85 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0682 - - gmx:100787841 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0682 7 5058399 5059334 Aed7g0682 7 5058399 5059334 ECH