Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0603 ATGTGGTGGTGGCTGTGTTGCGGCAGAAAGGGGAGTTCTAATTCCTTTTCATCATCTTCAACGGCTGAGGAAGTTACTCATGGAATCGATGGAACTGGCCTCACTGCTATTGTTACAGGGGCTACCAGTGGTATTGGTGCTGAGACTGCACGTGTTCTTGCCATGCGTGGTGTACATGTAATCATGGGAGTGAGAAATATGAATGCTGCAAAAGATATAAAAGAAACAATACTCAAGGAGATTCCCACAGCAAAAGTTGATGCCATGGAGTTAGACCTTAGTTCAATGGCATCTGTTCGGAAATTTGCATCAGAGTTCATTTCATCTGCTCTTCCATTAAACATTCTCATAAACAATGCAGGAATATTTGGAACCCCTTTCAAGCTTTCTGAGGACAACATTGAACTACAATTTGCCACAAATCACATGGGTCATTTTCTTTTAACAAATCTGTTGTTGGATACTATAAAGAGAACAGCATATGAAAGTAAGAAACAAGGAAGAATTGTTAATGTCTCCTCTACTGGTCATCAATGCAGCTATCGTGGAGGAATCATTTTTTATAAAATTAATGATGAATCCAGTTATCAGAAATTCCGTGCCTATGGACAATCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGACGTCTTAAGGAAGATGGAGTGGATATTACTGCTAATTCTATTCATCCGGGAGCCATTGCCACCAATATCCACCGTAACAACTGTGTAATCCCTGCCGTATTTGAAGGTGTACTTAAGATGTTGCTAAGTTGTGTACTTAAAAATGTCCAACAGGGAGCATCAACAACATGTTATGTAGCATTGCACCCAGAAGTGAGTGGAATTAGTGGCGAGTATTTTGCTGATAATAAAATCGCGAAAGCAAGTTCAAAAGGAAGGGACGTTGATTTGGCTAAGAAACTATGGGATTTCAGCATGAAATTGATCAAGTAA 966 0.3965 MWWWLCCGRKGSSNSFSSSSTAEEVTHGIDGTGLTAIVTGATSGIGAETARVLAMRGVHVIMGVRNMNAAKDIKETILKEIPTAKVDAMELDLSSMASVRKFASEFISSALPLNILINNAGIFGTPFKLSEDNIELQFATNHMGHFLLTNLLLDTIKRTAYESKKQGRIVNVSSTGHQCSYRGGIIFYKINDESSYQKFRAYGQSKLANILHANELARRLKEDGVDITANSIHPGAIATNIHRNNCVIPAVFEGVLKMLLSCVLKNVQQGASTTCYVALHPEVSGISGEYFADNKIAKASSKGRDVDLAKKLWDFSMKLIK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0603 321 CDD retinol-DH_like_SDR_c_like 33 313 - -
Aed7g0603 321 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Aed7g0603 321 PRINTS Glucose/ribitol dehydrogenase family signature 111 122 IPR002347 -
Aed7g0603 321 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Aed7g0603 321 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Aed7g0603 321 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Aed7g0603 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Aed7g0603 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Aed7g0603 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 122 IPR002347 -
Aed7g0603 321 Gene3D - 28 321 - -
Aed7g0603 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 296 IPR036291 -
Aed7g0603 321 Pfam short chain dehydrogenase 35 244 IPR002347 -
Aed7g0603 321 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 7 321 - -
Aed7g0603 321 PANTHER RETINOL DEHYDROGENASE 7 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0603 Aed-Chr7 4461278 4465680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0603 37 187 Acyl Lipid Metabolism Gene Families AT1G63380 30.864 2.62e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0603 - - gmx:100793843 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0603 7 4461278 4465680 Aed7g0603 7 4461278 4465680 ECH