Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0271 ATGACTCTGCTCTGGACACTGGACCCTGTTTCGTTATCGATTGTTTCTTTTTTTACTTTGTACATGGCTGTGGCTGATGATGCATTTGATGAGCAGTGTGATTACCTGTTCAAAGCTGTTCTGATTGGAGACTCAGGAGTTGGGAAATCAAATCTGATATCAAGGTTTGCAAAAGATGAATTCAGGTTGGATTCCAAGCCAACCATAGGTGTTGAGTTTGCTTACAGAAACATTAAAGTCAGGAACAAGCTCATCAAATCACAGATATGGGACACTGCCGGCCAAGAAAGGTTTAGGGCAATCACAAGCTCATACTACAGAGGAGCCTTGGGGGCAATGCTAGTGTATGACATAACAAAGAGAGCAAGTTTTGTGAATGTAGAAAAATGGCTACATGAGTTAAGAGAGTTTGGAGGAGAAGACATGGTGGTTGTTTTGGTGGGAAACAAATCTGATTTGGATCATTCAAGGCAAGTTGAGAGAGAAGAAGGGAAAGGGTTTGCAGAAAAAGAAGGGTTATGTTTCATGGAAACCTCTGCTTTGCAGAATCTGAATGTTGATGATGCATTCTTGGAAATGATCACTAAGATCCATGACATCATAAACCACAAAACTTTGGAAACCAAAATGAATGGTTCAGCATTAAATATTCCTACTGGGAAGGAGATTCATATAGCTGATGAAGTTACAGCTACTAAACAAGCTAATTGTTGTTCATAA 720 0.3972 MTLLWTLDPVSLSIVSFFTLYMAVADDAFDEQCDYLFKAVLIGDSGVGKSNLISRFAKDEFRLDSKPTIGVEFAYRNIKVRNKLIKSQIWDTAGQERFRAITSSYYRGALGAMLVYDITKRASFVNVEKWLHELREFGGEDMVVVLVGNKSDLDHSRQVEREEGKGFAEKEGLCFMETSALQNLNVDDAFLEMITKIHDIINHKTLETKMNGSALNIPTGKEIHIADEVTATKQANCCS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0271 239 PRINTS Transforming protein P21 ras signature 78 100 - -
Aed7g0271 239 PRINTS Transforming protein P21 ras signature 37 58 - -
Aed7g0271 239 PRINTS Transforming protein P21 ras signature 60 76 - -
Aed7g0271 239 PRINTS Transforming protein P21 ras signature 175 197 - -
Aed7g0271 239 PRINTS Transforming protein P21 ras signature 140 153 - -
Aed7g0271 239 ProSiteProfiles small GTPase Rab1 family profile. 32 238 - -
Aed7g0271 239 SMART rho_sub_3 39 200 IPR001806 GO:0003924|GO:0005525
Aed7g0271 239 TIGRFAM small_GTP: small GTP-binding protein domain 36 190 IPR005225 GO:0005525
Aed7g0271 239 SMART ras_sub_4 34 200 - -
Aed7g0271 239 SMART rab_sub_5 37 200 - -
Aed7g0271 239 ProSiteProfiles small GTPase Rho family profile. 30 198 - -
Aed7g0271 239 PANTHER DRAB5-RELATED 27 239 - -
Aed7g0271 239 SMART ran_sub_2 42 238 - -
Aed7g0271 239 ProSiteProfiles small GTPase Ras family profile. 31 239 IPR001806 GO:0003924|GO:0005525
Aed7g0271 239 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 27 239 - -
Aed7g0271 239 CDD Rab11_like 34 198 - -
Aed7g0271 239 Gene3D - 29 238 IPR027417 -
Aed7g0271 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 210 IPR027417 -
Aed7g0271 239 Pfam Ras family 38 198 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0271 Aed-Chr7 1924686 1927474 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0271 K07976 - gmx:100815793 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0271 7 1924686 1927474 Aed7g0271 7 1924686 1927474 ECH