Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed6g2386 | ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGGGGAACGGTGGTGTTAGCCGAGTACACCGAGTTCACTGGGAACTTCCCTGCAATCGCAGCTCAGTGTCTTCAGAAACTACCTTCTTCCAATAACAAGTTCACCTACACTTGCGACCACCACTCCTTCAATTTTCTCGTCGAAGATGGTTACGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAACAAATCTCTATTGCTTTTCTTGAACGTGTCAAAGCAGACTTTAAGAAAAGATATGGTGGCGGAAAGGCAGACACAGCTATTGCCAAAAGTCTCAACAAGGAGTTTGGATCAGTTATGAAAGAACACATGAAGTATATCATAGACCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGCCATTGATAGAGGAGAAAATATAACTATTCTTGCGGACAAGACAGAGACATTGCACTCGCAAGCCCAGGAATTCAGAAAGCAAGGAACTCAGGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTTGGAATTTTGTTGCTTTTGGTCCTGGTTATCTGGCTTTCTGTTTGCCATGGATTCAACTGTGCAAATTAG | 624 | 0.4215 | MSQESFIYSFVARGTVVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYTCDHHSFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGSVMKEHMKYIIDHAEEIEKLIKVKAQAIDRGENITILADKTETLHSQAQEFRKQGTQVRRKMWYQNMKIKLVVLGILLLLVLVIWLSVCHGFNCAN | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed6g2386 | 207 | PANTHER | VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 | 1 | 206 | - | - | |
| Aed6g2386 | 207 | SUPERFAMILY | SNARE fusion complex | 136 | 178 | - | - | |
| Aed6g2386 | 207 | Pfam | Synaptobrevin | 136 | 201 | IPR042855 | - | |
| Aed6g2386 | 207 | CDD | R-SNARE | 137 | 174 | - | - | |
| Aed6g2386 | 207 | CDD | Longin | 7 | 120 | IPR010908 | - | |
| Aed6g2386 | 207 | SUPERFAMILY | SNARE-like | 6 | 121 | IPR011012 | - | |
| Aed6g2386 | 207 | PANTHER | SNARE PROTEINS | 1 | 206 | - | - | |
| Aed6g2386 | 207 | SMART | Longin_2 | 31 | 113 | IPR010908 | - | |
| Aed6g2386 | 207 | Pfam | Regulated-SNARE-like domain | 32 | 110 | IPR010908 | - | |
| Aed6g2386 | 207 | Gene3D | Longin domain | 4 | 154 | - | - | |
| Aed6g2386 | 207 | ProSiteProfiles | Longin domain profile. | 10 | 114 | IPR010908 | - | |
| Aed6g2386 | 207 | ProSiteProfiles | v-SNARE coiled-coil homology domain profile. | 116 | 176 | IPR042855 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed6g2386 | Aed-Chr6 | 25528199 | 25531187 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed6g2386 | 1 | 206 | Miscellaneous Gene Families | AT1G04760 | 65.000 | 7.59e-102 | 291 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed6g2386 | K08511 | - | gmx:100781950 | 372.089 |
Event-related genes