Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2331 ATGTTTCTTGTTGATTGGTTTTATGGAATTTTGGCGACTCTCGGTCTGTGGCAAAAGGAGGCAAAGATTTTATTCCTAGGGTTAGATAATGCTGGGAAGACCACTTTGCTTCACATGCTCAAAGACGAGAGATTGGCTCAGCATCAACCTACTCAACATCCCACTTCGGAGGAGTTGAGTATTGGGAAGATAAAGTTTAAGGCTTTCGACTTGGGTGGCCACCAGATTGCTCGTAGGGTCTGGAAGGATTATTATGCTCAGGTGGATGCTGTAGTGTACTTGGTTGATGCATTTGACAAGGAAAGACTTTCAGAATCAAAGAAGGAGCTGGACGCTCTTCTCTCTGATGAGTCACTAGCAAATGTGCCTTTCCTTATATTGGGAAACAAGATTGACTTACCTTATGCTGCCTCAGAGGATGAGTTGCGTTATCACATGGGACTCACTAACTTTACCACAGGCAAGGGCAAGGTTAATATGGCTGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGCAGTATTGTTCGCAAGATGGGCTATGGTGAAGGCTTTCAGTGGCTCTCTCAGTACATTAAATAG 582 0.445 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLAQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAFDKERLSESKKELDALLSDESLANVPFLILGNKIDLPYAASEDELRYHMGLTNFTTGKGKVNMADSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2331 193 SMART arf_sub_2 3 193 - -
Aed6g2331 193 CDD Sar1 2 192 - -
Aed6g2331 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Aed6g2331 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Aed6g2331 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Aed6g2331 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Aed6g2331 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Aed6g2331 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Aed6g2331 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Aed6g2331 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Aed6g2331 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Aed6g2331 193 Gene3D - 1 193 IPR027417 -
Aed6g2331 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Aed6g2331 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Aed6g2331 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Aed6g2331 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2331 Aed-Chr6 25199055 25201401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2331 19 162 Miscellaneous Gene Families AT5G05670 29.012 1.77e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2331 K07953 - gmx:100811178 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2331 6 25199055 25201401 Aed6g2331 6 25199055 25201401 ECH
Aed6g2331 6 25199055 25201401 Aed8g1700 8 22124625 22127531 ECH